PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Genemark1.2480_g
Common NameCOCSUDRAFT_61690
Organism
Coccomyxa subellipsoidea C-169
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
Family ERF
Protein Properties Length: 293aa    MW: 33053.5 Da    PI: 8.993
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Genemark1.2480_ggenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.93.7e-11151195150
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaar 50 
                       s+y+GV++   + rW+A+ r    ng  k  slg f+ +e+Aa+a+++++
  Genemark1.2480_g 151 SKYRGVHQTFPTRRWEAQFRR---NG--KPTSLGCFDEEEQAARAYDKMM 195
                       89****************555...54..*******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.44E-9151197IPR016177DNA-binding domain
PfamPF008474.2E-7151196IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-8152197IPR001471AP2/ERF domain
SMARTSM003802.9E-4152221IPR001471AP2/ERF domain
PROSITE profilePS5103211.64152215IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MTEVLAEPAS TASQLSDAVV EQIVPVASDL ANTSQTQDSP STGPSPSASD QYSPAAVPPS  60
SAETAKDPFT LFRNAALTFS KLPAIYQRHR PGSPNVVAHQ VPDWRMVKAN RHQPPHRQIW  120
EKTDLTHDRS SPKTSKVNKA KGHSSGRTYT SKYRGVHQTF PTRRWEAQFR RNGKPTSLGC  180
FDEEEQAARA YDKMMLWCEL HNTSGLKGGG ITNFDPTEYE KDLVWLNSIS QEELVQASRS  240
EGRRQTAHGK AQRVITPEAR RERLRMQTRR RNRNRRYSPD DDEDDSMDED EY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1264275RMQTRRRNRNRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005650021.10.0hypothetical protein COCSUDRAFT_61690
TrEMBLI0Z4A80.0I0Z4A8_COCSC; Uncharacterized protein
STRINGXP_005650021.10.0(Coccomyxa subellipsoidea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP27461414
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G39250.17e-09AP2 family protein
Publications ? help Back to Top
  1. Blanc G, et al.
    The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.
    Genome Biol., 2012. 13(5): p. R39
    [PMID:22630137]