PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Genemark1.2391_g | ||||||||
Common Name | COCSUDRAFT_61601 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
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Family | MYB_related | ||||||||
Protein Properties | Length: 361aa MW: 39990.2 Da PI: 9.6039 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.1 | 2.3e-09 | 11 | 62 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 +++WT+eE+ l +v+++G g W++I + +R+ ++k++w+++ Genemark1.2391_g 11 KQKWTEEEERALRTGVERFGVGKWRLIQKDEIlgpqlINRSNVDLKDKWRNL 62 79**************************98766799989***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.961 | 6 | 67 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.01E-15 | 8 | 65 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-8 | 10 | 65 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-14 | 11 | 62 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.1E-8 | 11 | 62 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 4.22E-19 | 12 | 63 | No hit | No description |
SMART | SM00526 | 7.4E-4 | 211 | 280 | IPR005818 | Linker histone H1/H5, domain H15 |
PROSITE profile | PS51504 | 15.399 | 213 | 288 | IPR005818 | Linker histone H1/H5, domain H15 |
SuperFamily | SSF46785 | 9.98E-8 | 217 | 287 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 5.8E-9 | 218 | 277 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00538 | 1.6E-5 | 218 | 277 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003691 | Molecular Function | double-stranded telomeric DNA binding | ||||
GO:0033613 | Molecular Function | activating transcription factor binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0070491 | Molecular Function | repressing transcription factor binding | ||||
GO:1990841 | Molecular Function | promoter-specific chromatin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MSQVKRLGVS KQKWTEEEER ALRTGVERFG VGKWRLIQKD EILGPQLINR SNVDLKDKWR 60 NLNMDVFGSR GDKRGSRAKG RGKARQKPAA APAPVLDTPE KVWSLQPAHP HAAGMPLMGR 120 ADEALMWQQE VLVNRQRKRK RRPERAPEAN APIPYRGSSG ALRTLQEVAL GPDMDDPLPP 180 RRRRRKPRAL LDDDEDEEEE NGEEPAADPH GRTGPIPDDM VVAAIISLQD PVGSHPEDIS 240 RWIESHYASH YAVTPSFKRT VRGTLRRMVE AGRLETVPNH INLFRLGGVV RQLSQEAGME 300 WPRAKPGSTP LDSRTAVESA EAAAKAVAEA EEAAALATRL MAAANRYEQE AELADPGAVE 360 * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 135 | 141 | QRKRKRR |
2 | 136 | 141 | RKRKRR |
3 | 179 | 186 | PRRRRRKP |
4 | 181 | 187 | RRRRKPR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00652 | PBM | Transfer from LOC_Os01g51154 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_005649926.1 | 0.0 | hypothetical protein COCSUDRAFT_61601 | ||||
TrEMBL | I0Z413 | 0.0 | I0Z413_COCSC; Uncharacterized protein | ||||
STRING | XP_005649926.1 | 0.0 | (Coccomyxa subellipsoidea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP3956 | 9 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49950.3 | 6e-15 | telomere repeat binding factor 1 |
Link Out ? help Back to Top | |
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Entrez Gene | 17043384 |
Publications ? help Back to Top | |||
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