PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01038562001

Common Name

VIT_16s0098g01730

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

Nin-like

Protein Properties

Length: 271aa MW: 31332.7 Da PI: 7.8715

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01038562001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	82.1	5.4e-26	148	198	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++ ++++d+++yF+ pi+ AAkeL+v+lTvLK++CR+++I RWPhRkiksl GSVIVT01038562001 148 TAALEMDDIKQYFNVPITRAAKELKVGLTVLKKRCRELNITRWPHRKIKSL 198 67899********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.12	136	219	IPR003035	RWP-RK domain
Pfam	PF02042	2.0E-22	151	198	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MASTTKCRVL CTRVLQIFCR AFEFPQQNGL VYPMDRVFEY DPSLFSYQTN YNLPNFVDLR 60 ELEDHFLFLD QNLPSCNGVS IHDHPDDFDH YLEVGSEEHL TQLPSGNDSE DRLKIGGGFS 120 DLQSVIHGGF SGSWKHEEGT QQSSRSKTAA LEMDDIKQYF NVPITRAAKE LKVGLTVLKK 180 RCRELNITRW PHRKIKSLKA LITNAKVLNK TRELGLTEEI EMLEEHRRML EKQPEMELTE 240 KAKKLRQACF KANYKRKRAL QAPFTQISYE *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM468750	0.0	AM468750.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X238431.18, clone ENTAV 115.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019081768.1	0.0	PREDICTED: protein RKD4
TrEMBL	E0CV58	0.0	E0CV58_VITVI; Uncharacterized protein
STRING	VIT_16s0098g01730.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP567	17	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	9e-43	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	GSVIVT01038562001