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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01038562001 | ||||||||
Common Name | VIT_16s0098g01730 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | Nin-like | ||||||||
Protein Properties | Length: 271aa MW: 31332.7 Da PI: 7.8715 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 82.1 | 5.4e-26 | 148 | 198 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++ ++++d+++yF+ pi+ AAkeL+v+lTvLK++CR+++I RWPhRkiksl GSVIVT01038562001 148 TAALEMDDIKQYFNVPITRAAKELKVGLTVLKKRCRELNITRWPHRKIKSL 198 67899********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.12 | 136 | 219 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 2.0E-22 | 151 | 198 | IPR003035 | RWP-RK domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MASTTKCRVL CTRVLQIFCR AFEFPQQNGL VYPMDRVFEY DPSLFSYQTN YNLPNFVDLR 60 ELEDHFLFLD QNLPSCNGVS IHDHPDDFDH YLEVGSEEHL TQLPSGNDSE DRLKIGGGFS 120 DLQSVIHGGF SGSWKHEEGT QQSSRSKTAA LEMDDIKQYF NVPITRAAKE LKVGLTVLKK 180 RCRELNITRW PHRKIKSLKA LITNAKVLNK TRELGLTEEI EMLEEHRRML EKQPEMELTE 240 KAKKLRQACF KANYKRKRAL QAPFTQISYE * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM468750 | 0.0 | AM468750.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X238431.18, clone ENTAV 115. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019081768.1 | 0.0 | PREDICTED: protein RKD4 | ||||
TrEMBL | E0CV58 | 0.0 | E0CV58_VITVI; Uncharacterized protein | ||||
STRING | VIT_16s0098g01730.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP567 | 17 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53040.1 | 9e-43 | RWP-RK domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01038562001 |