PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01038562001
Common NameVIT_16s0098g01730
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family Nin-like
Protein Properties Length: 271aa    MW: 31332.7 Da    PI: 7.8715
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01038562001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK82.15.4e-26148198252
             RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                        ++ ++++d+++yF+ pi+ AAkeL+v+lTvLK++CR+++I RWPhRkiksl
  GSVIVT01038562001 148 TAALEMDDIKQYFNVPITRAAKELKVGLTVLKKRCRELNITRWPHRKIKSL 198
                        67899********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.12136219IPR003035RWP-RK domain
PfamPF020422.0E-22151198IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MASTTKCRVL CTRVLQIFCR AFEFPQQNGL VYPMDRVFEY DPSLFSYQTN YNLPNFVDLR  60
ELEDHFLFLD QNLPSCNGVS IHDHPDDFDH YLEVGSEEHL TQLPSGNDSE DRLKIGGGFS  120
DLQSVIHGGF SGSWKHEEGT QQSSRSKTAA LEMDDIKQYF NVPITRAAKE LKVGLTVLKK  180
RCRELNITRW PHRKIKSLKA LITNAKVLNK TRELGLTEEI EMLEEHRRML EKQPEMELTE  240
KAKKLRQACF KANYKRKRAL QAPFTQISYE *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4687500.0AM468750.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X238431.18, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019081768.10.0PREDICTED: protein RKD4
TrEMBLE0CV580.0E0CV58_VITVI; Uncharacterized protein
STRINGVIT_16s0098g01730.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5671777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53040.19e-43RWP-RK domain-containing protein