PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01038474001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MIKC_MADS
Protein Properties Length: 238aa    MW: 27292.2 Da    PI: 9.8348
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01038474001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.12.3e-281058250
                       ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
             SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                       ri+n++ rqvtfskRrng+lKKA+ELS+LCdaev ++ifsstgkly+y+
  GSVIVT01038474001 10 RIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLVIFSSTGKLYDYA 58
                       8***********************************************8 PP
2K-box82.11.2e-2781171999
              K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                        + +++ + +q+e+a L+++++ Lq ++R+llGe+L+ L +k+Lq+Le+qLe slk +R kK+++l+++i+el +k   +++en +L kk++
  GSVIVT01038474001  81 NPASEVKLWQREAASLRQQLQYLQDTHRQLLGEELSGLGIKDLQNLENQLEMSLKGVRMKKEKILTDEIRELNQKGSLIHQENIDLYKKVD 171
                        56788999*******************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.735161IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.58E-32290IPR002100Transcription factor, MADS-box
CDDcd002653.59E-44278No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-29323IPR002100Transcription factor, MADS-box
PfamPF003191.5E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-293859IPR002100Transcription factor, MADS-box
PfamPF014868.8E-2684170IPR002487Transcription factor, K-box
PROSITE profilePS5129714.68586176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELSILCD AEVGLVIFSS TGKLYDYANT  60
SVNSVIDRYN KLKEEQHQVL NPASEVKLWQ REAASLRQQL QYLQDTHRQL LGEELSGLGI  120
KDLQNLENQL EMSLKGVRMK KEKILTDEIR ELNQKGSLIH QENIDLYKKV DLIRQENMEL  180
QKKVYRAVNL NESNRSSQVS HGFSNGFDLH VPINLQLSQP HNNETPEKAM ELGLQLR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-21174174MEF2C
5f28_B5e-21174174MEF2C
5f28_C5e-21174174MEF2C
5f28_D5e-21174174MEF2C
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.294400.0cell culture
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:14701936}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4712692e-96AM471269.2 Vitis vinifera contig VV78X177847.9, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010648036.21e-169PREDICTED: MADS-box transcription factor 23 isoform X1
RefseqXP_019074599.11e-169PREDICTED: MADS-box transcription factor 23 isoform X1
RefseqXP_019074601.11e-169PREDICTED: MADS-box transcription factor 23 isoform X1
SwissprotQ6EP491e-106MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A0D2R7881e-128A0A0D2R788_GOSRA; Uncharacterized protein
TrEMBLA0A1U8NEV21e-128A0A1U8NEV2_GOSHI; MADS-box transcription factor 23 isoform X1
STRINGGorai.008G018100.11e-129(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.11e-101AGAMOUS-like 21
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]