PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01037927001
Common NameVIT_10s0092g00030
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 265aa    MW: 30080.9 Da    PI: 4.7584
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01037927001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.45.1e-08143187655
                        HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                        +++ r+RR++i ++ +eL +l+P  +      K++ ae+ + A +Y+k+Lq
  GSVIVT01037927001 143 SIAARQRRRKITEKTQELGKLIPGgN------KMNTAEMFQAAFKYVKYLQ 187
                        6788*******************955......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.557137186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.33E-9140191No hitNo description
SuperFamilySSF474593.53E-11140194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-11140194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-5143187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-9143192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009029anatomystamen
PO:0009032anatomypetal
PO:0025281anatomypollen
PO:0007016developmental stagewhole plant flowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MSSFPTTHSE LSKDLFTFQE NFGFSDTLAD QFFFDPDQYS YSDDSTHHLL PYFSYPSDHL  60
ISLSPEVFPL QEFESYLFPK RQKAYEDQHY MDFPPGYFPH PPELMPQLQV PLPEFQTAPA  120
FYGCGSVESS GKKGCRESLS AQSIAARQRR RKITEKTQEL GKLIPGGNKM NTAEMFQAAF  180
KYVKYLQAQV AILQLMGSLQ VNSEAFYVEE LQATASPMIQ EKLYSVEKCL VSKQFVEALA  240
NDELLLQSNS SIFNGIHQLI QPND*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4605420.0AM460542.2 Vitis vinifera contig VV78X153156.4, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002270265.10.0PREDICTED: transcription factor bHLH52
TrEMBLF6I3G30.0F6I3G3_VITVI; Uncharacterized protein
STRINGVIT_10s0092g00030.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP59691219
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.12e-25bHLH family protein