PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01037894001
Common NameLOC100254410, VIT_03s0091g00290
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family HB-PHD
Protein Properties Length: 978aa    MW: 108017 Da    PI: 6.296
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01037894001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox46.18.1e-156827271156
                        HHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox  11 qleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         +e+L + F++n+yp+++++e+LA++lg+t rqV+ WF N R   +
  GSVIVT01037894001 682 VTERLYKSFQENQYPDRAMKEKLAEELGITSRQVSKWFENARWSFR 727
                        6899**************************************8766 PP
2PHD38.82.2e-13310365151
                        SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
                PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                        +C+ C++    ++++++lCdg C++ fH+ Cl+++l +ee+p +   wlC+ C++k
  GSVIVT01037894001 310 FCAKCESkdMSADNDIILCDGaCDRGFHQFCLEPPLLKEEIPPDdeGWLCPACDCK 365
                        6999*9976666********66*******************99999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579035.09E-14300368IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.104.2E-13306365IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001611.101308365IPR019787Zinc finger, PHD-finger
PfamPF006288.4E-11310365IPR019787Zinc finger, PHD-finger
CDDcd155043.13E-29310362No hitNo description
SMARTSM002491.1E-9310363IPR001965Zinc finger, PHD-type
PROSITE patternPS013590311362IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.601.0E-15656723IPR009057Homeodomain-like
PROSITE profilePS5007113.961669729IPR001356Homeobox domain
SMARTSM003893.9E-13671733IPR001356Homeobox domain
SuperFamilySSF466892.35E-13675729IPR009057Homeodomain-like
PfamPF000462.8E-12681727IPR001356Homeobox domain
CDDcd000864.48E-12683729No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 978 aa     Download sequence    Send to blast
MDASPAQESN RTRKSSSPKQ NILEEARKLS ESVCSESSEQ KRPSENGQHE PAEISPVLSN  60
CIVTEQSELP PEDVGDTILG LPPADVTKNS LTEHLGLPPE DAIKNDGTEQ LGFFPEVVTK  120
SSIIEKLGQS EPPPENVARY SGLDQSGSAP KDLANKRTAK LVKRKYKLRS SVSGSRVLRS  180
RSQEKPKASQ PSDNFVNASA SRERKGRKKK RMNKTTADEF ARIRKHLRYL LNRMSYEQNL  240
IDAYSAEGWK GQSVEKLKPE KELQRASSEI SRRKLQIRDL FQHLDSLCAE GRFPESLFDS  300
EGQIDSEDIF CAKCESKDMS ADNDIILCDG ACDRGFHQFC LEPPLLKEEI PPDDEGWLCP  360
ACDCKVDCMD LLNDSQGTKL SVIDSWEKVF PEAAAAGNNQ DNNSGFSSDD SEDNDYDPDC  420
PEVDEKGQGD KSSSDKFDES DEFDESDESD FTSASDDMVV SPNNEQCLGL PSDDSEDDDF  480
DPDAPEIDEQ VNQGSSSSDF TSDSEDFTAT LDRRNFSDNE DGLDEQRRFG RKKKDTLKDE  540
LLSVLESNSG QDNAPLSAKR HVERLDYKKL HDEAYGNVSS DSSDDEDWTE NVIPRKRKNL  600
SGNVASVSPN GNTSITENGT NTKDIKHDLE AAGCTPKRRT RQKLNFESTN NSLAESHKDS  660
RSPGSTGEKS GQSSYKKLGE AVTERLYKSF QENQYPDRAM KEKLAEELGI TSRQVSKWFE  720
NARWSFRHRP PKEASAGKSA VKKDASTSQT DQKPEQEVVL RESSHNGVGK KESPKAGASK  780
VDRSKEANAG KSAVKKDAST SQTDQKPEQE VVIKESSHNG VGKKESTKAG ASKVDRCSGA  840
KRRRKLATDG SHRQKSSTPN STRQKTKSNH EASEATNGSR RQNSSTPKSR RQKTKLAGEA  900
SEATGGSSRQ NSSTPNSKRR KTKSDHEASN PVLSGKKIAK TAKSSSGTPK TKEKLSDRIQ  960
TRTKLKSLFA RNASYKY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.29950.0bud| flower| fruit| leaf
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4641610.0AM464161.2 Vitis vinifera contig VV78X020750.14, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002269077.10.0PREDICTED: homeobox protein HAT3.1 isoform X1
SwissprotP487861e-137PRH_PETCR; Pathogenesis-related homeodomain protein
TrEMBLF6H6980.0F6H698_VITVI; Uncharacterized protein
STRINGVIT_03s0091g00290.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP18301539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.14e-88Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain