PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01037846001
Common NameVIT_03s0091g00730
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 351aa    MW: 37968 Da    PI: 4.3825
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01037846001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.83e-112753151055
                        HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        r+RR+riN+++  L+ l+P+      +K++ +++Le+AveY+k Lq
  GSVIVT01037846001 275 RKRRERINERLKILQNLVPNG-----TKVDISTMLEEAVEYVKFLQ 315
                        9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-14265329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.402265314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-13270324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-12271320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.83E-13274319No hitNo description
PfamPF000101.3E-8275315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MEPVGAISEG EWGSLSGMYT TEEAEFMAQL LGNCSSFPNE LDGGSSLGIP SAFWAAGHES  60
VNKSLYCSSD AANTNLYCFS QGSSSYSGGS SLFPNSSQGS YYLSDSQQVL GGNNSAMSMD  120
FCIGDDKNNS LAVQVFADSL MEGDEYCLNV EECRRNFPEM PELPSATEDK NNKMPENSKK  180
RMRDSGDVSI KKKFFISSYG GAYIFCSVSS NNEEDNNGGV VNGQSSSSCS SEDESIASQE  240
LNGSSSPKGS AALNSKDKAR ASRGSATDPQ SLYARKRRER INERLKILQN LVPNGTKVDI  300
STMLEEAVEY VKFLQLQIKL LSSDDLWMYA PLAYNGMDIG LDLKISMPRK *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4880450.0AM488045.2 Vitis vinifera contig VV78X158350.17, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002264083.10.0PREDICTED: transcription factor bHLH139
TrEMBLD7SXR20.0D7SXR2_VITVI; Uncharacterized protein
STRINGVIT_03s0091g00730.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP10481454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.13e-55bHLH family protein