PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01037455001

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

FAR1

Protein Properties

Length: 884aa MW: 99376 Da PI: 6.2461

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01037455001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	52.8	1.3e-16	65	139	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++YA+++GF+++ + ++sk +g + r+f C + g ++++ ++ C+a+lk++++ +gkw+vt++e+eH+H+++ GSVIVT01037455001 65 FYEDYARRLGFTTKAGHCTRSKPDGMVLAREFACGRGGLKRRHADS--------------CDAMLKIELKGQGKWVVTEFEKEHTHSMM 139 9************************************9998777..............************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.3E-13	65	139	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	8.2E-28	277	368	IPR018289	MULE transposase domain
Pfam	PF04434	1.2E-10	555	589	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	11.152	555	591	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.6E-8	566	593	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009506	Cellular Component	plasmodesma
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 884 aa Download sequence Send to blast
MDVEVIDVEG GNMGSHAVAD DNGDAEPNES GEINAAENST AQDEDGVAEP HVGMEFDSED 60 AARTFYEDYA RRLGFTTKAG HCTRSKPDGM VLAREFACGR GGLKRRHADS CDAMLKIELK 120 GQGKWVVTEF EKEHTHSMMN PSKVHYLRPR RHFANTAKNM AETYQGVGIV PSGVMYVSMD 180 GNRVSIETNR GVRSAPPIES NRPNKNAGSI NYAARPSNRK RTLGRDAQNL LDYFKKMQAE 240 NPGFFYAIQL DEDNHMANVF WADARSRTAY SHFGDAVTLD TMYRVNQCRV PFAPFTGVNH 300 HGQTILFGCA LLLDDSEASF VWLFKTFLTA MNDHPPVSIT TDQDRAIQAA VAQVFPEARH 360 CISKWHVLRD GQERLAHVCH AHPNFQLELY NCINLTETIE EFESSWDSIL DKYDLRQNDW 420 LQSLYSIRMQ WVPVYFRDSF FASISPNRGF EGSFFDGYVN QQTTLPVFFR QYERALENWF 480 EKEIESDFDT ICTLPVLRTP SPMEKQAANL YTRKIFAKFQ EELVETFVYT ANRIEGDGAI 540 STYRVAKFED DHKAYIVSLN IPEMTASCSC QMFEYSGILC RHVLTVFTVT NVLTLPSHYI 600 LRRWTRNAKS GVGSDDRGGE LHGQESLTSR YNNLCREAIK YAEEGAIAVE MYNAAMVALK 660 EGGKKVAVMK KNVAKVAPPS TQVSGIGYDD KKTATLASDM TPLLWPRQDE VIRRFNLNDA 720 GVPAQPVADL NLPRMAPVSL HHDDGPPENM VVLPCLKSMT WVMENKNSTP GNRVAVINLK 780 LQDYSKTPSG ESEVKFQLSR VTLEPMLRSM AYINEQLSTP ANRVAVINLK LQDTETTSGE 840 SEVKFQVSRD TLGAMLRSMA YIREQLSNAG EAQSETPSKK QRK*

Sequence ? help Back to Top

Protein Sequence Length: 884 aa Download sequence Send to blast

MDVEVIDVEG GNMGSHAVAD DNGDAEPNES GEINAAENST AQDEDGVAEP HVGMEFDSED  60
AARTFYEDYA RRLGFTTKAG HCTRSKPDGM VLAREFACGR GGLKRRHADS CDAMLKIELK  120
GQGKWVVTEF EKEHTHSMMN PSKVHYLRPR RHFANTAKNM AETYQGVGIV PSGVMYVSMD  180
GNRVSIETNR GVRSAPPIES NRPNKNAGSI NYAARPSNRK RTLGRDAQNL LDYFKKMQAE  240
NPGFFYAIQL DEDNHMANVF WADARSRTAY SHFGDAVTLD TMYRVNQCRV PFAPFTGVNH  300
HGQTILFGCA LLLDDSEASF VWLFKTFLTA MNDHPPVSIT TDQDRAIQAA VAQVFPEARH  360
CISKWHVLRD GQERLAHVCH AHPNFQLELY NCINLTETIE EFESSWDSIL DKYDLRQNDW  420
LQSLYSIRMQ WVPVYFRDSF FASISPNRGF EGSFFDGYVN QQTTLPVFFR QYERALENWF  480
EKEIESDFDT ICTLPVLRTP SPMEKQAANL YTRKIFAKFQ EELVETFVYT ANRIEGDGAI  540
STYRVAKFED DHKAYIVSLN IPEMTASCSC QMFEYSGILC RHVLTVFTVT NVLTLPSHYI  600
LRRWTRNAKS GVGSDDRGGE LHGQESLTSR YNNLCREAIK YAEEGAIAVE MYNAAMVALK  660
EGGKKVAVMK KNVAKVAPPS TQVSGIGYDD KKTATLASDM TPLLWPRQDE VIRRFNLNDA  720
GVPAQPVADL NLPRMAPVSL HHDDGPPENM VVLPCLKSMT WVMENKNSTP GNRVAVINLK  780
LQDYSKTPSG ESEVKFQLSR VTLEPMLRSM AYINEQLSTP ANRVAVINLK LQDTETTSGE  840
SEVKFQVSRD TLGAMLRSMA YIREQLSNAG EAQSETPSKK QRK*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Vvi.17390	0.0	cell culture\| leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM462304	0.0	AM462304.1 Vitis vinifera contig VV78X082839.15, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002270441.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 3
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A5BK49	0.0	A5BK49_VITVI; Uncharacterized protein
STRING	XP_009365699.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP30	12	351

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Link Out ? help Back to Top
Phytozome	GSVIVT01037455001

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]