PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01037394001
Common NameLOC100253016, VIT_06s0009g02120
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family NF-YC
Protein Properties Length: 302aa    MW: 33481.9 Da    PI: 4.6668
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01037394001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC60.82.9e-196861898
              NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                       ++++P +rikki++adedv +i+  +P l+ska elf+ +l  r++  + e   +t+    ++++v+r ++fdfl +iv +
  GSVIVT01037394001  6 DTRFPASRIKKIMQADEDVGKIALAVPLLVSKALELFLQDLCDRTYQITLERGAKTMSSLHLKQCVQRFNVFDFLREIVSK 86
                       5789*************************************************************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.9E-25372IPR009072Histone-fold
SuperFamilySSF471132.86E-19488IPR009072Histone-fold
PfamPF008082.2E-17871IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MRKKLDTRFP ASRIKKIMQA DEDVGKIALA VPLLVSKALE LFLQDLCDRT YQITLERGAK  60
TMSSLHLKQC VQRFNVFDFL REIVSKVPDL GCSDAGGEDR SASKRRKVVD DEGNDSDEES  120
KRSRMHETGH TVGSGSGSGS GRGRGRGRGR GRGRGSRTIE RDTIAESEKP EDDTDMHTNN  180
DNQSQNPETR DNGAEPEESK ENISVVKNES KENISVGKNA DSCVRNFDLN VDLDENGDST  240
SILPAAPAPA PVTPSPKLTE MKHEEYPGWS LSDMEKMEID PIQLANLNRR IDEDEEDYDE  300
E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A6e-21272575Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143153RGRGRGRGRGR
2145154RGRGRGRGRG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.232620.0bud| fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4269040.0AM426904.1 Vitis vinifera contig VV78X251901.13, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002268866.10.0PREDICTED: dr1-associated corepressor isoform X2
TrEMBLD7T1D70.0D7T1D7_VITVI; Uncharacterized protein
STRINGVIT_06s0009g02120.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP21791635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.15e-73nuclear factor Y, subunit C11