PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01037362001
Common NameLOC100246221, VIT_06s0009g02480
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 488aa    MW: 53226.2 Da    PI: 4.8891
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01037362001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.92.3e-183178148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT  Ed  l+d+v+++G g+W++++++ g+ R++k+c++rw ++l
  GSVIVT01037362001 31 KGPWTSAEDAVLIDYVTKHGEGNWNAVMKHSGLSRCGKSCRLRWANHL 78
                       79******************************************9986 PP
2Myb_DNA-binding51.91.8e-1684127146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        +g++T+eE+ +++++++++G++ W++ a++++ gRt++++k++w++
  GSVIVT01037362001  84 KGAFTPEEEHRIIELHARMGNK-WARMAAELP-GRTDNEIKNYWNT 127
                        799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.562678IPR017930Myb domain
SuperFamilySSF466893.56E-3029125IPR009057Homeodomain-like
SMARTSM007172.0E-133080IPR001005SANT/Myb domain
PfamPF002491.4E-143178IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-243285IPR009057Homeodomain-like
CDDcd001671.13E-93478No hitNo description
PROSITE profilePS5129425.33779133IPR017930Myb domain
SMARTSM007171.7E-1483131IPR001005SANT/Myb domain
PfamPF002491.8E-1584127IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-2586131IPR009057Homeodomain-like
CDDcd001672.08E-1086127No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MAGDQEGSPL GEEEVGSGGK SGGGGGGPLK KGPWTSAEDA VLIDYVTKHG EGNWNAVMKH  60
SGLSRCGKSC RLRWANHLRP DLKKGAFTPE EEHRIIELHA RMGNKWARMA AELPGRTDNE  120
IKNYWNTRIK RLQRAGLPIY PPDVSMKALN GSQQSQSMGS LTTGEASPSD LLQGNSFEIP  180
AVQFKNLQNP GIYPYPPTYF DILPSGSLTQ NLGSSDGQNF MFPAMHPPKR FRESETFFSG  240
LNDDFSNAFP ALDLYDDTCG LPGSHALSNG NFSSEPISGA MKVELPSLQY SEAQVGNWGS  300
LFPMPSIESV DTLIQSPQTE QIQVDCLSPS KSGLLEAVVY ESRNLKRKYD SCHQASNTAI  360
ECNDVVGNLP LNPYEAEWNV YVDPTSPLGN SAASVFNVHT PISGSSPDEP QSIETLLGCK  420
VHPEPVNQIA THYDGKKETP NQMDLSRPDR LLDADWFGPD TERGREQATW RDALNALLGE  480
DINSNKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-30291315106B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11725GGKSGGGGG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.158690.0cell culture| fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4693490.0AM469349.1 Vitis vinifera contig VV78X097754.15, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010651548.10.0PREDICTED: transcription factor GAMYB
TrEMBLF6HAD10.0F6HAD1_VITVI; Uncharacterized protein
STRINGVIT_06s0009g02480.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.35e-86myb domain protein 33