PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01037333001
Common NameLOC100249553, VIT_06s0009g02730
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family HSF
Protein Properties Length: 286aa    MW: 33070.3 Da    PI: 7.5448
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01037333001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.57e-36251162102
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl+k+y++++d+++++++sw e++++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgFkk+  ++         weF++++F+kg k++
  GSVIVT01037333001  25 FLTKTYQLVDDPHTDHIVSWGEDETTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFKKIVADR---------WEFANEYFRKGGKHM 107
                        9****************************************************************999.........*************** PP

                        XXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkks 102
                        l++i+r+k+
  GSVIVT01037333001 108 LSEIHRRKT 116
                        *******96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.6E-3816108IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.3E-5621114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.14E-3322114IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.9E-3125114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-192548IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-196375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-197688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MAFTVDKCEE MVFSVESQKA VPAPFLTKTY QLVDDPHTDH IVSWGEDETT FVVWRPPEFA  60
RDLLPNYFKH NNFSSFVRQL NTYGFKKIVA DRWEFANEYF RKGGKHMLSE IHRRKTPHHH  120
HQPYHDHHQP PQFLQPELEN SVWIDSPLPS PTASSDVLTA LTQDNHRLRR KNFMLLSELA  180
HMKTLYNDII FFIQNHVKPV APYDQRPKSN AAPKLIELDS SLQSPNVSGM QTPKHRYSAG  240
NCSMSTLTDD QQTNNGSFKL FGVPLSGKKR LHPEKFDPEE LQCPY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A6e-212111617122Heat shock factor protein 1
5d5u_B7e-212111626131Heat shock factor protein 1
5d5v_B7e-212111626131Heat shock factor protein 1
5d5v_D7e-212111626131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4404430.0AM440443.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X035931.5, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002265293.10.0PREDICTED: heat stress transcription factor B-4b
SwissprotQ9C6353e-90HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLD7T1930.0D7T193_VITVI; Uncharacterized protein
STRINGVIT_06s0009g02730.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-86heat shock transcription factor B4