PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01037260001
Common NameLOC100265339, VIT_06s0009g03530
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family HB-other
Protein Properties Length: 510aa    MW: 57653.4 Da    PI: 6.2658
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01037260001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.92e-192075257
                       T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
           Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                       +kR+  t++q+++Le+++++++yp+++++ eLA+++gLte+q++ WF+ rR k+kk
  GSVIVT01037260001 20 KKRRLKTPSQVQALEKFYNEHKYPTESMKSELAEEIGLTEKQISGWFCHRRLKDKK 75
                       89****************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-21275IPR009057Homeodomain-like
PROSITE profilePS5007117.4431676IPR001356Homeobox domain
SuperFamilySSF466897.7E-181880IPR009057Homeodomain-like
SMARTSM003896.7E-201880IPR001356Homeobox domain
PfamPF000467.1E-172075IPR001356Homeobox domain
CDDcd000868.63E-182075No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MEESSEVHSE ENKICEEKNK KRRLKTPSQV QALEKFYNEH KYPTESMKSE LAEEIGLTEK  60
QISGWFCHRR LKDKKLLEDE AGANGRQDRS SGVIQDRGSG YRQDSCGSTK HGDYRHIDPR  120
EVESRRFYGQ EFSAGDLNYE HRSHYTGNFS GRGDTSSESS SDLQDRSGIV MPINTKGTQN  180
RGFVRPSGYL KVKGEIENVA ITAVKRQLGR HYREDGPPLG VEFQPLPPGA FESSIRDQDD  240
EPYYVGNSIM SQSPDNPGVP KPPSLSTRYE VCSSKLASQN SCMEEANFGT MHGFDSRDNY  300
SNRQLKQKGS FPNYSNLSPG WNFSKDMHED AAGETSFVNS NKNYEMRSNP GIEGMRLSSV  360
SNRRLHPYGG KVTSEQTDSW LHEYDDIRPK IVQQKEYLKS KPSNLILQQS GSCDDEGRGQ  420
LRNMAKMEEV CRERRAMREY SDPVGEKVQP TNEMRVAKRV RDESPPLDYA KKSSFSETPT  480
WGNQIKGSAM EMPSSFSEDE TAETSSSMD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11924KKRRLK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.170110.0bud| inflorescence| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3956350.0FQ395635.1 Vitis vinifera clone SS0AFA14YN23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002279963.20.0PREDICTED: uncharacterized protein LOC100265339
TrEMBLF6HA210.0F6HA21_VITVI; Uncharacterized protein
STRINGVIT_06s0009g03530.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8823814
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03250.12e-89HB-other family protein