PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01036959001
Common NameLOC100248064, VIT_03s0088g01240
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 345aa    MW: 38478.9 Da    PI: 6.9267
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01036959001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.41.1e-12169216355
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        + h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k+Lq
  GSVIVT01036959001 169 QDHIIAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKYLKQLQ 216
                        6799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.044166215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-17166229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-10169216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.3E-17170228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.43E-13171220No hitNo description
SMARTSM003531.2E-14172221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MEISPLRGLS EVGMEDPTFI HPWQTNFLEE LTVLPMEAAF GEHLYQAFSH HQSFNLKPSM  60
EINSHVGLDR PLKLLKPNSW NPSNTNDMDM PHPLVPSSPN VFSFVNSNYT NQVPVVKPKE  120
EAVSSKSSAT FPSDGLVSQG LFENQNYVFK ASQGAKRIST TTARHSQTQD HIIAERKRRE  180
KLSQRFIALS AIVPGLKKMD KASVLGDAIK YLKQLQERVK TLEEQTRKKT TESVVFVKKS  240
QVFLDGDNSS SDEDFSGSPL DEPLPEIEAR FSDKSVLIRI HCEKRKGVVE KLVAEVEGLH  300
LTVINSSVMT FGNSALDVTI IAEMEVEFSM TVKDLVKKLH AGLK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-14170219857Transcription factor MYC2
5gnj_B3e-14170219857Transcription factor MYC2
5gnj_E3e-14170219857Transcription factor MYC2
5gnj_F3e-14170219857Transcription factor MYC2
5gnj_G3e-14170219857Transcription factor MYC2
5gnj_I3e-14170219857Transcription factor MYC2
5gnj_M3e-14170219857Transcription factor MYC2
5gnj_N3e-14170219857Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174179ERKRRE
2175180RKRREK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.178250.0cell culture
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:12679534}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4716240.0AM471624.1 Vitis vinifera contig VV78X194073.4, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002268443.30.0PREDICTED: transcription factor bHLH18
RefseqXP_010647980.10.0PREDICTED: transcription factor bHLH18
RefseqXP_019074348.10.0PREDICTED: transcription factor bHLH18
SwissprotQ9T0722e-65BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A438JN420.0A0A438JN42_VITVI; Transcription factor bHLH25
TrEMBLD7T3I80.0D7T3I8_VITVI; Uncharacterized protein
STRINGVIT_03s0088g01240.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6561573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-67bHLH family protein
Publications ? help Back to Top
  1. Velasco R, et al.
    A high quality draft consensus sequence of the genome of a heterozygous grapevine variety.
    PLoS ONE, 2007. 2(12): p. e1326
    [PMID:18094749]