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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GSVIVT01036939001 |
Common Name | LOC100259610, VIT_02s0087g00140 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family |
Trihelix |
Protein Properties |
Length: 213aa MW: 25898.9 Da PI: 6.5492 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GSVIVT01036939001 | genome | Genoscope | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 41.1 | 4.7e-13 | 1 | 45 | 38 | 86 |
trihelix 38 mrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
m+e g++r+p qCk+kw+nl +ryk ++++ ++ ++cp+f++l+
GSVIVT01036939001 1 MKEMGYKRTPDQCKCKWKNLVNRYKGKETSDPEN----GRQCPFFEELH 45
799***********************99999974....678******98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
Protein Sequence Length: 213 aa
Download sequence Send
to blast |
MKEMGYKRTP DQCKCKWKNL VNRYKGKETS DPENGRQCPF FEELHAIFEE RAKNMQRRLL 60 ESEAGSMQSR KRARRISAGD HSSDEFSEDE DDDEDDSEEE RLPRSSNPRK RKAERERPSA 120 SSIPEMLKEF FQQQQRMEMQ WREAMERRAQ ERQMFEQEWR QSMEKLERER LMVEQAWRER 180 EEQRRAREES RAEKRDVLLT TLLNKLIHEN HL*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AM488312 | 1e-156 | AM488312.2 Vitis vinifera contig VV78X082303.4, whole genome shotgun sequence. |