PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01036939001 | ||||||||
Common Name | LOC100259610, VIT_02s0087g00140 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | Trihelix | ||||||||
Protein Properties | Length: 213aa MW: 25898.9 Da PI: 6.5492 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 41.1 | 4.7e-13 | 1 | 45 | 38 | 86 |
trihelix 38 mrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 m+e g++r+p qCk+kw+nl +ryk ++++ ++ ++cp+f++l+ GSVIVT01036939001 1 MKEMGYKRTPDQCKCKWKNLVNRYKGKETSDPEN----GRQCPFFEELH 45 799***********************99999974....678******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.3 | 1 | 25 | IPR017930 | Myb domain |
Pfam | PF13837 | 1.7E-12 | 1 | 47 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MKEMGYKRTP DQCKCKWKNL VNRYKGKETS DPENGRQCPF FEELHAIFEE RAKNMQRRLL 60 ESEAGSMQSR KRARRISAGD HSSDEFSEDE DDDEDDSEEE RLPRSSNPRK RKAERERPSA 120 SSIPEMLKEF FQQQQRMEMQ WREAMERRAQ ERQMFEQEWR QSMEKLERER LMVEQAWRER 180 EEQRRAREES RAEKRDVLLT TLLNKLIHEN HL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM488312 | 1e-156 | AM488312.2 Vitis vinifera contig VV78X082303.4, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010644782.1 | 1e-119 | PREDICTED: trihelix transcription factor GT-3b | ||||
TrEMBL | A0A438IZD0 | 1e-118 | A0A438IZD0_VITVI; Trihelix transcription factor GT-3b | ||||
TrEMBL | F6HJ54 | 1e-118 | F6HJ54_VITVI; Uncharacterized protein | ||||
STRING | VIT_02s0087g00140.t01 | 1e-119 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP2262 | 15 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01380.1 | 2e-13 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01036939001 |
Entrez Gene | 100259610 |