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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GSVIVT01036686001 |
Common Name | LOC100260359, VIT_19s0085g01180 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family |
C3H |
Protein Properties |
Length: 536aa MW: 57728.1 Da PI: 7.4833 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GSVIVT01036686001 | genome | Genoscope | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 33.4 | 7.8e-11 | 164 | 188 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26
+++ C +++ t tCk+Gd+CkF H+
GSVIVT01036686001 164 GEKDCAHYMLTRTCKFGDSCKFDHP 188
7889********************8 PP
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2 | zf-CCCH | 30.3 | 7.3e-10 | 215 | 241 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
++++ C++f++t Ck+G +CkF+H++
GSVIVT01036686001 215 PGEPDCPYFMKTQKCKFGHKCKFNHPK 241
5789*********************96 PP
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3 | zf-CCCH | 33.1 | 9.5e-11 | 266 | 288 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27
+C f+ +tG Ck+G++CkF+H++
GSVIVT01036686001 266 PCAFYVKTGKCKFGATCKFHHPK 288
8********************96 PP
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4 | zf-CCCH | 38.2 | 2.4e-12 | 341 | 364 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26
++ C+f+++tG CkyG++C+++H+
GSVIVT01036686001 341 EVDCPFYLKTGSCKYGATCRYNHP 364
689********************9 PP
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5 | zf-CCCH | 40.3 | 5.4e-13 | 426 | 447 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26
+C+f+++tG+Ck+G+rCkF+H+
GSVIVT01036686001 426 ECDFYMKTGECKFGERCKFHHP 447
7********************8 PP
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6 | zf-CCCH | 41.1 | 3e-13 | 474 | 499 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
+t +C+f+++tGtCkyG +CkF H+p
GSVIVT01036686001 474 GTIICPFYLKTGTCKYGVTCKFDHPP 499
6889********************96 PP
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Protein Features
? help Back to Top |
 |
Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00356 | 0.0011 | 162 | 189 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.507 | 162 | 190 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.79E-5 | 163 | 189 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-8 | 164 | 188 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.5E-4 | 168 | 187 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.7E-4 | 214 | 241 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.249 | 214 | 242 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-7 | 216 | 241 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.3E-5 | 219 | 243 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.6E-4 | 220 | 241 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.4E-4 | 261 | 288 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.371 | 261 | 289 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.63E-6 | 264 | 288 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.3E-8 | 266 | 288 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.2E-5 | 266 | 287 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-6 | 338 | 365 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.802 | 338 | 366 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.4E-10 | 341 | 364 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-5 | 341 | 365 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.1E-4 | 344 | 363 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.3E-6 | 421 | 448 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.441 | 421 | 449 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.31E-6 | 422 | 450 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.0E-10 | 426 | 447 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.6E-5 | 427 | 447 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.9E-8 | 472 | 499 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.239 | 472 | 500 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-10 | 474 | 499 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.76E-6 | 474 | 499 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.6E-6 | 475 | 497 | IPR000571 | Zinc finger, CCCH-type |
Sequence ? help Back to Top |
Protein Sequence Length: 536 aa
Download sequence Send
to blast |
MANQLYGYNP SYGAAASNLS SVYPSRSVTD PFLSDSSLLS SSRYLSSDHL SSDPSYYSVT 60 ERHSSMFDGL RFSASDIGGA GAFSSRIPGG IGASVSTHGV DVGASVDPLV AGLKRSSEAL 120 YHPSVLGAHN TIGQSEAWFS TNSLAKRPRF ESASNLPIYP QRPGEKDCAH YMLTRTCKFG 180 DSCKFDHPIW VPEGGIPDWK EVPIVAANEF LPQRPGEPDC PYFMKTQKCK FGHKCKFNHP 240 KDQIISLGAP ENTDVFVLPE RPSELPCAFY VKTGKCKFGA TCKFHHPKDI QIASTGKNNA 300 DGEQAETGAK GAGTTGDVKL PVSVTPALVH NSKGLPMRLG EVDCPFYLKT GSCKYGATCR 360 YNHPDRNAIN PPAAAIGHAI VASPAANLNV GVVNPVTSIL HPIDPRLSQT MGVGPTIYPQ 420 RPGQMECDFY MKTGECKFGE RCKFHHPIDR SAPTATKLQQ NIRLTLAGFP RREGTIICPF 480 YLKTGTCKYG VTCKFDHPPP GEVMAMATSQ GASTSAGEEA NGDEKEDETA KEEEQ*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Highly expressed in inflorescences, at intermediate levels in leaves and stems and at lower levels in roots. {ECO:0000269|PubMed:11595801}. |
Functional Description ? help
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Source |
Description |
UniProt | Involved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AM454000 | 0.0 | AM454000.1 Vitis vinifera contig VV78X082437.9, whole genome shotgun sequence. |