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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GSVIVT01036633001 |
Common Name | LOC100260951, VIT_13s0084g00530 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family |
MYB |
Protein Properties |
Length: 264aa MW: 29642.4 Da PI: 5.0684 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GSVIVT01036633001 | genome | Genoscope | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 52 | 1.7e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+WT Ed +l d+++ +G g W++I++ g++R++k+c++rw++yl
GSVIVT01036633001 14 RGAWTVVEDNILTDYIQTHGEGGWRSIPKNAGLKRCGKSCRLRWLNYL 61
89********************************************97 PP
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2 | Myb_DNA-binding | 48 | 2.9e-15 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg+ + E++l+++++++lG++ W+ Ia++++ gRt++++k++w++
GSVIVT01036633001 67 RGNISHAEEDLIIRLHRLLGNR-WSMIAKRLP-GRTDNEIKNYWNTN 111
7888999***************.*********.***********986 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 264 aa
Download sequence Send
to blast |
MGRAPCCAKE GLNRGAWTVV EDNILTDYIQ THGEGGWRSI PKNAGLKRCG KSCRLRWLNY 60 LKPDIKRGNI SHAEEDLIIR LHRLLGNRWS MIAKRLPGRT DNEIKNYWNT NLRKKVKGKE 120 SNKVDEPAGV IRTKAFRCTG VFIPPQPPKE ETATLDTMVV PEEPSMMNQD LVNNAATSLE 180 SQSNDGALSM AVPDMNSSDF SMNFDIGDHS PTDIFDSEFW KACNLDNVLE EGSTSGDTND 240 PWPSSDQFLM FSDEMIKDWI KDD*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AM477275 | 0.0 | AM477275.2 Vitis vinifera contig VV78X042136.3, whole genome shotgun sequence. |
Orthologous Group
? help Back to Top |
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |