PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01036533001
Common NameVIT_14s0083g00930
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 403aa    MW: 44354.2 Da    PI: 5.9362
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01036533001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.51e-17106155255
                        HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        r +h++ E+rRR++iN++f+ Lr+l+P++    ++K +Ka+ L +++eYI+ Lq
  GSVIVT01036533001 106 RSKHSATEQRRRSKINERFQILRDLIPQN----DQKRDKASFLLEVIEYIQFLQ 155
                        899*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-19104177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.218104154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-23104177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.81E-16106158No hitNo description
PfamPF000103.6E-15106155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-13110160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MYIIVLVGEK SALIPLCFPS PQPSEQLAFA RRTTFLCRLP PPLEALSHLQ GNRGFESMVK  60
PTRSHQEEEE DDDEDIIARN DPSSLKGDLA MRADGRSVDQ KVSAHRSKHS ATEQRRRSKI  120
NERFQILRDL IPQNDQKRDK ASFLLEVIEY IQFLQEKLNM YEGSYQGWSQ EPTKLMPWRN  180
RGPVENFMDH SQVIKNGSGH ENNVAVTPAT LVNAQNPVES DFGTAAAYNV MDNTPGPASQ  240
AVPLNMPLQT NMFTHVGRSD IPTQSLHGSV SDVENIASQP LPHFSHGRPC TTDCAVPSNT  300
VNEPEELTIE SGTVSISSAY SQGLLNSLTQ ALQSSGVDLS QASISVQIDI GKRANKGLNA  360
TTSNAKDYEN PSPSNRTMAH SGFRSSSEDS DQAHKRLRTD TS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.96880.0bud| cell culture| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3829170.0FQ382917.1 Vitis vinifera clone SS0ABG38YN10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002278322.20.0PREDICTED: transcription factor BIM2
TrEMBLD7SMM60.0D7SMM6_VITVI; Uncharacterized protein
STRINGVIT_14s0083g00930.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13601747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.12e-72BES1-interacting Myc-like protein 2