PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01036426001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family FAR1
Protein Properties Length: 302aa    MW: 34584.2 Da    PI: 8.9331
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01036426001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR170.83.1e-22169254290
               FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                        f ++YAk++GF+vrk k +++  ng+ + r f Cs+eg+r++++ + + ++ +r+etrtgC+ +++vk++ +g+w++tkl+leHnH l+
  GSVIVT01036426001 169 FCKKYAKRIGFTVRKGKVQRK-ANGTLKGRCFLCSCEGFRTKKHPN-QGTKYQRSETRTGCNVQIQVKLD-NGQWVITKLHLEHNHRLQ 254
                        889*************99997.8999****************9999.99999******************.***************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.0E-19169254IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MQFLMGLNDS YATIHGQILL ICNLYLIHVE FTHLSFNKKN RLNRKQSNQA PILWIHTHQL  60
HQNVYRTLSS CRYSSIGSRP DVRGAIQESD DLVNHNRVGG TFRRLTIQDE LNFDSWWSSF  120
YSGETEMAIN VNGDEIGTLV NVNEKNPEDD DQIPRRGMAF SSELEAEEFC KKYAKRIGFT  180
VRKGKVQRKA NGTLKGRCFL CSCEGFRTKK HPNQGTKYQR SETRTGCNVQ IQVKLDNGQW  240
VITKLHLEHN HRLQCLDTLN WPSDEVEGAS GADKVCQNFQ LKLPKYFSLG TFTSKLIFFV  300
G*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4328470.0AM432847.2 Vitis vinifera contig VV78X271334.9, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019073423.11e-146PREDICTED: uncharacterized protein LOC104877994
TrEMBLD7TLH61e-167D7TLH6_VITVI; Uncharacterized protein
STRINGVIT_18s0001g06550.t011e-167(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.23e-18FAR1 family protein