PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01036422001 | ||||||||
Common Name | VIT_18s0001g06550 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | FAR1 | ||||||||
Protein Properties | Length: 240aa MW: 27163.6 Da PI: 8.0635 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 71.1 | 2.6e-22 | 107 | 192 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 f ++YAk++GF+vrk k +++ ng+ + r f Cs+eg+r++++ + + ++ +r+etrtgC+ +++vk++ +g+w++tkl+leHnH l+ GSVIVT01036422001 107 FCKKYAKRIGFTVRKGKVQRK-ANGTLKGRCFLCSCEGFRTKKHPN-QGTKYKRSETRTGCNVQIQVKLD-NGQWVITKLHLEHNHRLQ 192 889*************99997.8999****************9999.99999******************.***************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.3E-19 | 107 | 192 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MSIEPYHLGR YSSIGSRPDV WGAIQESDDL VNHHRVGGSF RGLTIQDELN FDSWWSSFYS 60 GETEMAINVN GDEIGTLVNV NEKNPEDDDQ IPRRGMAFSS ELEAEEFCKK YAKRIGFTVR 120 KGKVQRKANG TLKGRCFLCS CEGFRTKKHP NQGTKYKRSE TRTGCNVQIQ VKLDNGQWVI 180 TKLHLEHNHR LQCLDTLNWP SDEVEGASGA DKVCQNFQLK LPKYFSLGTF TSKLIFFVG* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM482248 | 0.0 | AM482248.2 Vitis vinifera contig VV78X044248.8, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019073423.1 | 1e-160 | PREDICTED: uncharacterized protein LOC104877994 | ||||
TrEMBL | D7TLH6 | 1e-180 | D7TLH6_VITVI; Uncharacterized protein | ||||
STRING | VIT_18s0001g06550.t01 | 1e-180 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP30 | 12 | 351 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 3e-17 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01036422001 |