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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GSVIVT01036388001 |
Common Name | LOC100258486, VIT_18s0001g05850 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family |
ERF |
Protein Properties |
Length: 178aa MW: 20093.8 Da PI: 5.7141 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GSVIVT01036388001 | genome | Genoscope | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 57.4 | 3.6e-18 | 12 | 63 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
+ y+GVr +k +g+Wv+eIr+p gk++r++lg++ +e+Aa+a++ a++ l+g+
GSVIVT01036388001 12 PSYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSYEAPEMAAAAYDVAALHLKGH 63
57*****999.**********8...557***********************99986 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 178 aa
Download sequence Send
to blast |
MKNRADPHAP IPSYRGVRKR KWGKWVSEIR EPGKKTRIWL GSYEAPEMAA AAYDVAALHL 60 KGHRAELNFP ELAPSFPRPT SFSPEDVQFA SAQAALHIKS IASGDVSARS PSRVGMSSVP 120 TRVGLSASEI REINEWPMDS PRMWMMELRE EPLVLSDEIF ELSEWEEVEN QYSIWDL*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AM469581 | 0.0 | AM469581.1 Vitis vinifera contig VV78X027004.57, whole genome shotgun sequence. |
Orthologous Group
? help Back to Top |
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |