PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01036137001
Common NameVIT_06s0080g00340
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bZIP
Protein Properties Length: 325aa    MW: 36240.5 Da    PI: 5.0122
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01036137001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_147.73.4e-15244288549
                        CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 
                        +r+rr++kNRe+A rsR+RK+a++ eLe +  +L++eN++Lkk +
  GSVIVT01036137001 244 RRQRRMIKNRESAARSRARKQAYTVELELELNQLKEENTKLKKIV 288
                        79****************************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.2E-11240304IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.737242286IPR004827Basic-leucine zipper domain
PfamPF001702.7E-13244288IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.69E-11244288No hitNo description
CDDcd147079.97E-25244286No hitNo description
Gene3DG3DSA:1.20.5.1704.9E-14244292No hitNo description
PROSITE patternPS000360247262IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0033613Molecular Functionactivating transcription factor binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009010anatomyseed
PO:0025501developmental stagefruit formation stage
PO:0025502developmental stagefruit ripening stage
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MVVSESDSGK VKPKSPPQLH QEDSLFPAPI RQNSVFSLTL DEYQVRSGKS FGSMNMDELI  60
NSIWNGDENI LYSVSSQDEP NNDKHMADQT DLPRQASFSI PPPLCKKTID EVWSEINKNK  120
QQQNSNNNGS NDSVQGEQTF GEMTLEDFLV KAGVVQDVFV EEASGSSKRH MLTPTQRSGS  180
FPNNNTNLET TFGIGNMMGL EFSASQNSGN NLSSNDLAAY LAQGNKFPGE KRTTDGTLEM  240
AVERRQRRMI KNRESAARSR ARKQAYTVEL ELELNQLKEE NTKLKKIVVR VDACLSENIQ  300
EENLFTPLAL FLTCVCLCKH FSLV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4401810.0AM440181.2 Vitis vinifera contig VV78X263815.34, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002274428.10.0PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 1
RefseqXP_010651900.10.0PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 1
TrEMBLD7TCV60.0D7TCV6_VITVI; Uncharacterized protein
STRINGVIT_06s0080g00340.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5401580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44460.11e-41bZIP family protein