PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01036134001
Common NameLOC100258619, VIT_06s0080g00360
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bZIP
Protein Properties Length: 501aa    MW: 54948.8 Da    PI: 6.939
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01036134001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.31.1e-10190231445
                        XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                         k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  GSVIVT01036134001 190 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQDL 231
                        6889*************************9777777666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.7E-7183233No hitNo description
SMARTSM003380.0034187242IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.186189233IPR004827Basic-leucine zipper domain
PfamPF001706.5E-8190232IPR004827Basic-leucine zipper domain
CDDcd147082.23E-22191241No hitNo description
SuperFamilySSF579597.74E-7191234No hitNo description
PROSITE patternPS000360194209IPR004827Basic-leucine zipper domain
PfamPF141447.3E-31278353IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MATHRVGETN LSGSAPSNHH LPYAVLHGIS PPAATFINQE GSAFDFGELE EAIVLQGVKI  60
RNDEAKTSLF TARPAATLEM FPSWPMRFQQ TQRGSSKSGG ESTDSGSAVN TLSSRAEAQL  120
EPESPISIKP TSDHQAFDQK HLQFQHQQQL EMASDTSRLA GPSESQPAAS KPPPEKRKGA  180
GSTSEKTLDA KTLRRLAQNR EAARKSRLRK KAYVQQLESS RIKLTQLEQD LQRARSQGLF  240
LGGGGGGGGG GGAGGIISPG AAIFDMEYAR WLEDDHRHMS ELRTGLQAHL LDGDLRVIVD  300
GYLSHYDEIF RLKGVAAKSD VFHLITGMWT TPAERCFLWM GGFRPSDLIK MLIAQLDPLT  360
EQQVMGIYGL QHSSQQAEEA LSQGQEQLQQ SLIDTIASGS VADDMAHMVM ALGQLTNLEG  420
FVRQADNLRQ QTIHQLCRIL TVRQAARCFL VIGEYYGRLR ALSSLWASRP REAMMGDEHS  480
CQTTTDLHMV QSSHSHFTNF *
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During anther development, accumulates in anther primordia during archesporial cell specification and later present in a horseshoe pattern associated with the lateral and adaxial portion of primordia, prior to the emergence of distinct locules. Expressed throughout sporogenic tissue and surrounding cells layers in adaxial and adaxial locules. Localized to the tapetum and middle layers, gradually fading postmeiosis with degeneration of these cell layers. {ECO:0000269|PubMed:20805327}.
UniprotTISSUE SPECIFICITY: Mostly expressed in stems, inflorescence apex and flowers, and, to a lower extent, in seedlings, leaves and siliques. {ECO:0000269|PubMed:20805327}.
Functional Description ? help Back to Top
Source Description
UniProtTogether with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269|PubMed:20805327, ECO:0000269|PubMed:27717447}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00131DAPTransfer from AT1G08320Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by flg22 in leaves. {ECO:0000269|PubMed:27717447}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4789331e-150AM478933.2 Vitis vinifera contig VV78X134383.5, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002276067.20.0PREDICTED: transcription factor TGA2.2 isoform X1
RefseqXP_019076297.10.0PREDICTED: transcription factor TGA2.2 isoform X1
SwissprotQ93XM60.0TGA9_ARATH; Transcription factor TGA9
TrEMBLD7TCV40.0D7TCV4_VITVI; Uncharacterized protein
STRINGVIT_06s0080g00360.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP64961119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.30.0bZIP family protein
Publications ? help Back to Top
  1. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  2. Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S
    Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22.
    Plant Sci., 2016. 252: p. 12-21
    [PMID:27717447]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]