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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GSVIVT01036090001 |
Common Name | LOC100263868, VIT_06s0080g00790 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family |
MYB |
Protein Properties |
Length: 226aa MW: 25624.6 Da PI: 8.4513 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GSVIVT01036090001 | genome | Genoscope | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 23.5 | 1.3e-07 | 15 | 60 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
+W+ d+l+ +a + + +W++Ia+ ++ g++ +++ ++ +
GSVIVT01036090001 15 SWSRHQDKLFERALVVIPEEtpdRWDKIAAQVP-GKSSSEVRRHYED 60
7*****************99*************.***********76 PP
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2 | Myb_DNA-binding | 43 | 1e-13 | 114 | 158 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
+WT+eE+ l++ + +++G+g+W++I+r Rt+ q+ s+ qky
GSVIVT01036090001 114 PWTEEEHRLFLIGLQRYGKGDWRSISRNAVVSRTPTQVASHAQKY 158
8*******************************************9 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 226 aa
Download sequence Send
to blast |
MMMVNQSPSP SSSSSWSRHQ DKLFERALVV IPEETPDRWD KIAAQVPGKS SSEVRRHYED 60 LVHDVAEIDS GRVELPLYED ESCGSPWASD SRAGQVSFSP RPRQSESERK KGVPWTEEEH 120 RLFLIGLQRY GKGDWRSISR NAVVSRTPTQ VASHAQKYFM RLTSGKKDKK RSSIHDITTV 180 DTSNSLPHSN TQTWVGESLA SQIPYYEEGP PSFGFSILKW NMWKV*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269|PubMed:26243618}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AM431329 | 0.0 | AM431329.2 Vitis vinifera contig VV78X228264.5, whole genome shotgun sequence. |