![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSVIVT01036071001 | ||||||||
Common Name | LOC100265540, VIT_06s0080g00970 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 376aa MW: 42903.5 Da PI: 6.3296 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 160.7 | 5.8e-50 | 17 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 + pGfrF+Ptdeel+++yLkkk++g++ ++ evi+ev+i+k+ePwdLp k++ ++e+ew+fFs+r +ky++g++++rat+ gyWkatgk++ GSVIVT01036071001 17 MFPGFRFSPTDEELISHYLKKKIQGSEKSV-EVIAEVEICKYEPWDLPaKSIIESENEWFFFSPRGRKYPNGSQSKRATEYGYWKATGKERI 107 579************************999.99***************667777899********************************999 PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 v+s +++l+g k+tLvf+ grapkge+t+W+mhey + GSVIVT01036071001 108 VKS-GSTLIGSKRTLVFHIGRAPKGERTEWIMHEYCM 143 998.99*****************************87 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.26E-56 | 8 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.841 | 17 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-25 | 19 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway | ||||
GO:0033619 | Biological Process | membrane protein proteolysis | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0071472 | Biological Process | cellular response to salt stress | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 376 aa Download sequence Send to blast |
MSEVPRETQL SIAASSMFPG FRFSPTDEEL ISHYLKKKIQ GSEKSVEVIA EVEICKYEPW 60 DLPAKSIIES ENEWFFFSPR GRKYPNGSQS KRATEYGYWK ATGKERIVKS GSTLIGSKRT 120 LVFHIGRAPK GERTEWIMHE YCMEGKSQDS LVVCRLRKNT EFRMNGSQRR LSTMTGHNHA 180 ISEVNIDQTN LSEREQGIES SSNKCSSSYD SYSIGQVDST SESDQKPSNE FTQPESSHQQ 240 DCDRADDCFA EIMNDDIIKL DETFLADNPQ LLFMIADKTE LERESEPPEP VDTTQVLPFQ 300 GTANRRIRLK KQGPRRISYP AEYMSIEPPK YLMKTLVNRL IYLLVIILTL LVLFSSLGGS 360 GWVKKVIHTT MYHDF* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-46 | 8 | 158 | 13 | 164 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-46 | 8 | 158 | 13 | 164 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-46 | 8 | 158 | 13 | 164 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-46 | 8 | 158 | 13 | 164 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-46 | 8 | 158 | 16 | 167 | NAC domain-containing protein 19 |
3swm_B | 3e-46 | 8 | 158 | 16 | 167 | NAC domain-containing protein 19 |
3swm_C | 3e-46 | 8 | 158 | 16 | 167 | NAC domain-containing protein 19 |
3swm_D | 3e-46 | 8 | 158 | 16 | 167 | NAC domain-containing protein 19 |
3swp_A | 3e-46 | 8 | 158 | 16 | 167 | NAC domain-containing protein 19 |
3swp_B | 3e-46 | 8 | 158 | 16 | 167 | NAC domain-containing protein 19 |
3swp_C | 3e-46 | 8 | 158 | 16 | 167 | NAC domain-containing protein 19 |
3swp_D | 3e-46 | 8 | 158 | 16 | 167 | NAC domain-containing protein 19 |
4dul_A | 3e-46 | 8 | 158 | 13 | 164 | NAC domain-containing protein 19 |
4dul_B | 3e-46 | 8 | 158 | 13 | 164 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Accumulates in imbibed seeds (PubMed:19704545). Detected in early stages of seed development, especially in the basal tip of immature embryo. Particularly expressed in vascular tissues of inflorescence stems, roots, leaves and petioles (PubMed:17410378). {ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:19704545}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seeds, leaves, roots and inflorescence (PubMed:17410378). Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:17410378}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP), probably via metalloprotease activity. Regulates gibberellic acid-mediated salt-responsive repression of seed germination and flowering via FT, thus delaying seed germination under high salinity conditions. {ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704528, ECO:0000269|PubMed:19704545}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00280 | DAP | Transfer from AT2G27300 | Download |
![]() |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By high salt stress (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Repressed by gibberellic acid (GA), but induced by the GA biosynthetic inhibitor paclabutrazol (PAC) (PubMed:18363782). Accumulates transiently in seeds upon imbibition (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Induced by drought stress (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704528, ECO:0000269|PubMed:19704545}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AM474719 | 0.0 | AM474719.2 Vitis vinifera contig VV78X088138.4, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002272914.2 | 0.0 | PREDICTED: NAC domain-containing protein 40 isoform X1 | ||||
Swissprot | Q9XIN7 | 2e-93 | NAC40_ARATH; NAC domain-containing protein 40 | ||||
TrEMBL | F6HHD1 | 0.0 | F6HHD1_VITVI; Uncharacterized protein | ||||
STRING | VIT_06s0080g00970.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP10249 | 6 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G27300.1 | 5e-95 | NTM1-like 8 |
Link Out ? help Back to Top | |
---|---|
Phytozome | GSVIVT01036071001 |
Entrez Gene | 100265540 |
Publications ? help Back to Top | |||
---|---|---|---|
|