PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSVIVT01035959001 | ||||||||
Common Name | VIT_04s0008g06550 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 165aa MW: 18677.4 Da PI: 8.1931 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 43.8 | 8e-14 | 35 | 81 | 1 | 48 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp 48 lppG+rF+Ptd e++v+yL+kkv++++l+ + i ev++y ++P++L GSVIVT01035959001 35 LPPGYRFNPTDAEIIVFYLRKKVDHQPLPP-NKIIEVNLYAYDPEELA 81 79*************************999.6799************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.68E-17 | 29 | 84 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 11.566 | 35 | 164 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.9E-7 | 36 | 78 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0007016 | developmental stage | whole plant flowering stage |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 165 aa Download sequence Send to blast |
MNLLELGEDA SLQTAPQEVQ NNRSEYGKHF DLNSLPPGYR FNPTDAEIIV FYLRKKVDHQ 60 PLPPNKIIEV NLYAYDPEEL AGFFRLGMVN GSISRQGTRN IGMGNVPIGQ SEVDTGRPPE 120 LIKRSNLRIE RRTGVNDMRV RIYQVPFSFS LYCILRCFLF VAVG* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AM428598 | 1e-138 | AM428598.1 Vitis vinifera contig VV78X100938.1, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010648824.1 | 1e-50 | PREDICTED: NAC domain-containing protein 2-like isoform X1 | ||||
TrEMBL | D7SV36 | 1e-117 | D7SV36_VITVI; Uncharacterized protein | ||||
STRING | VIT_04s0008g06550.t01 | 1e-117 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G61110.1 | 7e-14 | NAC domain containing protein 25 |
Link Out ? help Back to Top | |
---|---|
Phytozome | GSVIVT01035959001 |