 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
GSVIVT01035905001 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
|
| Family |
C2H2 |
| Protein Properties |
Length: 253aa MW: 27730.2 Da PI: 8.5995 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| GSVIVT01035905001 | genome | Genoscope | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 13.6 | 0.0002 | 73 | 95 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C++C + F ++ L H++ H
GSVIVT01035905001 73 FSCNYCQRKFYSSQALGGHQNAH 95
89*****************9988 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 253 aa
Download sequence Send
to blast |
MPEDKKIKLR EVNENSCPQL TKVDLLFNLE LHSKDAADHG FNTELNLIDC LNTDSSQTSS 60
EIPQPADAEP RVFSCNYCQR KFYSSQALGG HQNAHKRERT LAKRGQRLGA PMVAAATAFG 120
HPYFHHQHYS SMASLPLHGA YNRSLGIQVH SMIHKPSLTT PSSGSGNLYG HRSWSRPPID 180
QQPAVGRLAV ENCHEGVTAG PLSRGGIGRF DTVRMMINSQ ANEGIGGFCW TGGGRLKTNQ 240
DELQKLDLSL KL*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AM463005 | 0.0 | AM463005.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X190100.14, clone ENTAV 115. |
| Orthologous Group
? help Back to Top |
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Representative plant | OGRP82 | 15 | 137 |
