PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01035884001
Common NameVIT_04s0008g05750
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family WRKY
Protein Properties Length: 263aa    MW: 29006.9 Da    PI: 9.3417
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01035884001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.92.3e-2996155159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        ++Dg++WrKYGqK  k+++ pr+Y+rC++a +Cpvkkkv+r+ ed ++++ tYeg Hnhe
  GSVIVT01035884001  96 VKDGFQWRKYGQKITKDNPSPRAYFRCSMApQCPVKKKVQRCMEDSSILVATYEGAHNHE 155
                        58***************************99****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.9E-2990157IPR003657WRKY domain
SuperFamilySSF1182901.96E-2593157IPR003657WRKY domain
SMARTSM007745.6E-3396156IPR003657WRKY domain
PfamPF031063.5E-2497155IPR003657WRKY domain
PROSITE profilePS5081125.0498157IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MMAALDGGIR NHKVEVLKIE LERLRKENED LRLGLEIMGS KYEVLQAHLQ KNMATISPDH  60
GSSQDSNKRP RTEEVSVAKA SQVFVRTNPK DKSLTVKDGF QWRKYGQKIT KDNPSPRAYF  120
RCSMAPQCPV KKKVQRCMED SSILVATYEG AHNHEPPHDA PAGGSSYSPD SPIKGLVANF  180
PCPTTVDPFQ PTVTLDLTLS GTGTGTGQEK RRPQNFMEDY RKSNCGRVEE YVASLTKDTN  240
FTLALAAAVA RSITDQPKPT KA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-20961571474WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Modulates plant innate immunity against X.oryzae pv. oryzae (Xoo) (By similarity). {ECO:0000250|UniProtKB:Q6EPZ2, ECO:0000250|UniProtKB:Q6QHD1}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by biotic elicitors (e.g. fungal chitin oligosaccharide) (By similarity). Induced by pathogen infection (e.g. M.grisea and X.oryzae pv. oryzae (Xoo)) (PubMed:16528562). Accumulates after treatment with benzothiadiazole (BTH) and salicylic acid (SA) (By similarity). {ECO:0000250|UniProtKB:Q6EPZ2, ECO:0000269|PubMed:16528562}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4857100.0AM485710.2 Vitis vinifera contig VV78X037442.10, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010648680.10.0PREDICTED: WRKY transcription factor 18
SwissprotQ6IEK58e-47WRK76_ORYSI; WRKY transcription factor WRKY76
TrEMBLF6H3I50.0F6H3I5_VITVI; Uncharacterized protein
STRINGVIT_04s0008g05750.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1149547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31800.15e-47WRKY DNA-binding protein 18