PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01035664001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 782aa    MW: 87389.1 Da    PI: 6.3998
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01035664001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.86.9e-151863248
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       g+WT eEd+ l +av+ + g++Wk+I +++   Rt  qc++rwqk+l
  GSVIVT01035664001 18 GKWTVEEDDMLREAVQCYKGKNWKKIVECLK-DRTVIQCQHRWQKVL 63
                       89****************************9.************986 PP
2Myb_DNA-binding591.1e-1869115148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        +g+WT+eEde+  ++vk +G++ W+ Ia++++ gR +kqc++rw+++l
  GSVIVT01035664001  69 KGSWTKEEDEKMMKLVKIYGPKKWSNIAKHLP-GRIGKQCRERWHNHL 115
                        799*****************************.*************97 PP
3Myb_DNA-binding47.63.8e-15121163145
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                        + +WT+eEd+ l +a++ +G++ W+   + ++ gRt++ +k++w+
  GSVIVT01035664001 121 KEAWTEEEDLALMHAHQIHGNK-WAELTKFLP-GRTDNAIKNHWN 163
                        579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.8681263IPR017930Myb domain
SMARTSM007171.3E-121665IPR001005SANT/Myb domain
PfamPF002491.1E-121763IPR001005SANT/Myb domain
SuperFamilySSF466896.7E-151873IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.4E-201871IPR009057Homeodomain-like
CDDcd001675.26E-121963No hitNo description
PROSITE profilePS5129432.7164119IPR017930Myb domain
SuperFamilySSF466894.31E-3166162IPR009057Homeodomain-like
SMARTSM007172.1E-1768117IPR001005SANT/Myb domain
CDDcd001673.72E-1671115No hitNo description
Gene3DG3DSA:1.10.10.602.1E-2872118IPR009057Homeodomain-like
PfamPF139216.5E-1872130No hitNo description
Gene3DG3DSA:1.10.10.604.5E-21119170IPR009057Homeodomain-like
SMARTSM007175.9E-14120168IPR001005SANT/Myb domain
PROSITE profilePS5129418.597120170IPR017930Myb domain
CDDcd001676.17E-11123163No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 782 aa     Download sequence    Send to blast
MLLFLRRTRG PTRRSTTGKW TVEEDDMLRE AVQCYKGKNW KKIVECLKDR TVIQCQHRWQ  60
KVLNPEIVKG SWTKEEDEKM MKLVKIYGPK KWSNIAKHLP GRIGKQCRER WHNHLNPAIN  120
KEAWTEEEDL ALMHAHQIHG NKWAELTKFL PGRTDNAIKN HWNCSVKKKM DKYMASGLLA  180
QFKSLPDVNY QNHSLHSLSL GAQDSNGNDS GVEHGKETEE ITDYAKTSTV IDYSQSANRT  240
ANAVPSTREE FQMNEESIQG KGQHISLVSD SNRCHNSAEG VSFSLPEMPD QPRFSKVLGK  300
NLSYDAGTFE SRDWQFALQE LTNISSLDLG QDLIKVSKHC ICASGNHEML PGPVLNAVGL  360
TSSVMQNVEA CSDQPVNMLI SKCDCCPVIF PEAENHECLS FRDHLDCSAI CNLDGCTDSL  420
HYQSSNSQSS EISETLASQS IHPLRSELLG TSSCQTSLPV ALPDDDSTPI FGSEPNHLND  480
ASLGTTEQEP VTCSQAGFIH TNDSASSPCD NGTDSFGLHI QPDNKESSRS VHLVAFVSGP  540
SDIMKNFLAT DEKPIMHTEQ IDSGDIFNET CCFPSLDVPF FSCGLIESDS SHQQEYSPLG  600
VRKLMMSPMD CFSPLGLWDS PSQDVSHETD LKNAAKTFAS SPHILKKRHH ELLTPSSQKR  660
CEKKLGNAMN HGFCETPYKR GSESPSVLNS PWFISSFLPG LRTGTNITTE DIRNFMSPEE  720
RRTSGWFYED RKITPCYRSN SRWCSLTHAL HFSSVGTRGT GFGELLPYLR ICNCLCKETT  780
L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-66181708159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-66181708159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00466DAPTransfer from AT4G32730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4303010.0AM430301.2 Vitis vinifera contig VV78X051134.5, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010648520.10.0PREDICTED: myb-related protein 3R-1 isoform X2
TrEMBLF6H2Y30.0F6H2Y3_VITVI; Uncharacterized protein
STRINGVIT_04s0008g03790.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9448613
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.11e-136Homeodomain-like protein