|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
GSVIVT01035569001 |
Common Name | VIT_04s0008g02870 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
|
Family |
Trihelix |
Protein Properties |
Length: 251aa MW: 28819.5 Da PI: 5.0349 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GSVIVT01035569001 | genome | Genoscope | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 33.6 | 1e-10 | 25 | 97 | 2 | 76 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsess 76
Wt + l L++ +e + ++ + ++W+ +++++ + ++r+ +qC+ kw++l +y kik++e++ +++
GSVIVT01035569001 25 WTINDSLILVNEIAAVEGECLNALSTYQKWKIIAENCTALDVSRTFNQCRRKWDSLLFEYNKIKKWESRS--RNV 97
777777777777778888888888999*****************************************84..333 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 251 aa
Download sequence Send
to blast |
MEQGEGHQSR VSSSRRTRSQ LAPDWTINDS LILVNEIAAV EGECLNALST YQKWKIIAEN 60 CTALDVSRTF NQCRRKWDSL LFEYNKIKKW ESRSRNVSFW TLESERRREL GLPVDFEREL 120 FKAIDDLVSS QEVRSDTDPG TDPEAEDDRL EVIAEYGPKK QKRREMPQKT TSLEEKEQMM 180 VMKLRENADL IDAIVKGNLV DSVDFGLGGS KNRETLQADF KRRQGDKLIA CLRDIADTLD 240 QLRDIVQKCG *
|
Best hit in Arabidopsis thaliana ? help
Back to Top |
Hit ID |
E-value |
Description |
AT4G31270.1 | 1e-58 | sequence-specific DNA binding transcription factors |