PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01035477001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 184aa MW: 21295.6 Da PI: 10.5005 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 48.7 | 9.9e-16 | 12 | 53 | 4 | 45 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 ++ + rq +s+R++gil KA+ L vLCd++v++++fs+tgk GSVIVT01035477001 12 QSGRERQAKYSQRKQGILRKANDLAVLCDTDVLLLMFSPTGK 53 67789***********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 7.4E-20 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 20.997 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.32E-19 | 1 | 75 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 4.28E-18 | 2 | 54 | No hit | No description |
PRINTS | PR00404 | 4.5E-12 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.5E-14 | 13 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.5E-12 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.5E-12 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MGRRKLSIRR LQSGRERQAK YSQRKQGILR KANDLAVLCD TDVLLLMFSP TGKPCLTVGQ 60 NKNLLTVMER LASLSVDYRE ERAAYTLELL AKMHRRLNSD VDQKNFSLDS NEILQLKRSE 120 LEQLRSQLAE KSKAMRDWKF PSTVNDLGQI RRMENSLSEL MVRVRAKKRE FQEQEEVPES 180 SLP* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM469230 | 5e-96 | AM469230.2 Vitis vinifera contig VV78X185365.4, whole genome shotgun sequence. | |||
GenBank | FQ390452 | 5e-96 | FQ390452.1 Vitis vinifera clone SS0AEB17YK24. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019074788.1 | 1e-130 | PREDICTED: agamous-like MADS-box protein AGL30 isoform X2 | ||||
TrEMBL | A0A438K7X9 | 1e-117 | A0A438K7X9_VITVI; Agamous-like MADS-box protein AGL30 | ||||
STRING | VIT_04s0008g01980.t01 | 2e-92 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5946 | 11 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03060.2 | 3e-32 | AGAMOUS-like 30 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01035477001 |