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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GSVIVT01035465001 |
Common Name | VIT_04s0008g01850 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family |
Trihelix |
Protein Properties |
Length: 514aa MW: 58245.7 Da PI: 6.9681 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GSVIVT01035465001 | genome | Genoscope | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 47.9 | 3.4e-15 | 447 | 495 | 1 | 49 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkq 49
rW+k ev+aLi++r+++e+r+++ lk+plWee+s+ m + g++rs+k+
GSVIVT01035465001 447 RWPKAEVQALIQVRSRLESRFQEPGLKGPLWEEISSSMTSMGYQRSAKR 495
8**********************************************96 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
Pfam | PF13837 | 2.5E-8 | 446 | 494 | No hit | No description |
CDD | cd12203 | 1.52E-17 | 447 | 495 | No hit | No description |
Sequence ? help Back to Top |
Protein Sequence Length: 514 aa
Download sequence Send
to blast |
MEGDSCSSLF SISTPQKQNQ HHHLHYQHHH HHHHLPPPPP PHQQQKHERQ QQQQQFFQLH 60 PVPFTQQLLQ QQHQFEVFQL QQQQQQQQRR LHQQLRLENE LGRNGGGGGE GVGNGGGGEG 120 GSASLPFFNF KLGLNENSGN REVVMNEEDK EEDGLIGGSE EHIPGNRPNS LEMPQCCWQS 180 QGDGTIKEPF WKPLNAQLFN KNDKETNEDE EKKEEGEGNK KINHGQVLDN DGGKNLGNKY 240 RFFGELEAIC SGAGLGETNQ TGSGSALTGE NMTRNAGLLR PLADPHCSNL GGAAAAIGVD 300 HGSETSIGEE AALRKLQKRK RRRKMKEELN SMAGFFESLV KQLMDHQEGL YRKFLEVVER 360 IDQERMEREE AWRSKQLENF NREAAARAHE QTLASSREVA VVSYLEKITG QSIDLPNKNN 420 TQLHSQRYLP KEPVKINNFS SSNTNSRWPK AEVQALIQVR SRLESRFQEP GLKGPLWEEI 480 SSSMTSMGYQ RSAKRSFLFY LFQFLAIIIH FFN*
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 316 | 322 | QKRKRRR |
2 | 317 | 322 | KRKRRR |
3 | 317 | 323 | KRKRRRK |
4 | 318 | 322 | RKRRR |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AM424675 | 0.0 | AM424675.2 Vitis vinifera contig VV78X269243.4, whole genome shotgun sequence. |