PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

MYB

Protein Properties

Length: 309aa MW: 35029.9 Da PI: 4.9488

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01035461001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.3	3e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Edellv+++k +G g W+ I+++ g++R++k+c++rw++yl GSVIVT01035461001 14 KGAWTAIEDELLVEYIKVHGEGKWSGIPKKSGLKRCGKSCRLRWLNYL 61 79********************************************97 PP
2	Myb_DNA-binding	54.2	3.3e-17	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++++eE++l+++++k+lG++ W++Ia +++ gRt++++k++w++ GSVIVT01035461001 67 RGNMSPEEEDLIIRLHKLLGNR-WSLIAGRIP-GRTDNEIKNYWNT 110 89******************.*****.*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.8E-23	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	17.526	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	2.85E-29	11	108	IPR009057	Homeodomain-like
SMART	SM00717	1.4E-14	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	1.1E-14	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	1.75E-11	16	61	No hit	No description
PROSITE profile	PS51294	25.038	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.5E-23	65	115	IPR009057	Homeodomain-like
SMART	SM00717	5.0E-16	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	1.1E-15	67	110	IPR001005	SANT/Myb domain
CDD	cd00167	2.23E-12	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MGRGPCCSKE GMNKGAWTAI EDELLVEYIK VHGEGKWSGI PKKSGLKRCG KSCRLRWLNY 60 LRPDIKRGNM SPEEEDLIIR LHKLLGNRWS LIAGRIPGRT DNEIKNYWNT NFAKKAPARQ 120 TSSSEKNPIM ITSPPSDLLP PNLQQQQFTN VWATPLQPEL EFEALPPPMD QNFSKTTASE 180 PQFTDNSPDI IMDLNPGEIS VSEIFNDDFI NFNDFEASEM RNIDNRCNTQ VQEIAENWAA 240 SDCLDQAQYY MGSDFSPLAF LFESEGHLTT PNNKATTYIL ILLLMSPYFN IQPKISILNL 300 IFKISIFI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	8e-27	12	116	25	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Vvi.30237	0.0	bud

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269\|PubMed:9839469}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:18541146, ECO:0000269\|PubMed:9839469}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM437441	0.0	AM437441.1 Vitis vinifera contig VV78X080653.4, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002279874.1	0.0	PREDICTED: transcription factor MYB3 isoform X1
Swissprot	Q9S9K9	2e-60	MYB3_ARATH; Transcription factor MYB3
TrEMBL	A0A438EX36	0.0	A0A438EX36_VITVI; Transcription repressor MYB4
TrEMBL	F6H3S0	0.0	F6H3S0_VITVI; Uncharacterized protein
STRING	VIT_04s0008g01810.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	1e-62	myb domain protein 3

Link Out ? help Back to Top
Phytozome	GSVIVT01035461001

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhou M, et al. Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis. Plant J., 2015. 84(2): p. 395-403 [PMID:26332741] Wada T,Hayashi N,Tominaga-Wada R Root hair formation at the root-hypocotyl junction in CPC-LIKE MYB double and triple mutants of Arabidopsis. Plant Signal Behav, 2015. 10(11): p. e1089372 [PMID:26339713] Wada T,Tominaga-Wada R CAPRICE family genes control flowering time through both promoting and repressing CONSTANS and FLOWERING LOCUS T expression. Plant Sci., 2015. 241: p. 260-5 [PMID:26706076] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239] Zhou M, et al. LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis. Plant Physiol., 2017. 174(3): p. 1348-1358 [PMID:28483877] Mondal SK,Roy S Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis. J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601 [PMID:28490275]