PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01035406001 | ||||||||
Common Name | LOC100247474, VIT_04s0008g01290 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | GATA | ||||||||
Protein Properties | Length: 307aa MW: 34091.4 Da PI: 8.5535 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 60.5 | 2.2e-19 | 175 | 208 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs C+ttkTplWR+gp+g+k+LCnaCG+++rk + GSVIVT01035406001 175 CSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 208 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 7.3E-20 | 169 | 220 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 9.03E-13 | 171 | 209 | No hit | No description |
PROSITE profile | PS50114 | 12.466 | 173 | 205 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.4E-15 | 173 | 208 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.09E-13 | 174 | 206 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 175 | 200 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 4.1E-17 | 175 | 208 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MTPVFLNTSS SSPFPALELK EDHQHFQLLF STNPPSYQAS SSHPCPSFFN SSTQSQRGDH 60 SPRDPQQHED KDDKYISHGG CGESQVFSSS SLLQPMADDN KSSHKLSVFK KEEGDEGNKS 120 TEKWMSSKMR LMRKMMNSDC TTAKIEQKVE DHQQWDNINE FNSSNNTSNI PIRVCSDCNT 180 TKTPLWRSGP RGPKSLCNAC GIRQRKARRA MAAAAAAAAN GTAVGTEISP MKMKLPNKEK 240 KMHTSNVGQQ KKLCKPPCPP PTEKKLCFED FTSSICKNSG FRRVFPRDEE EAAILLMALS 300 CDLVYS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.1486 | 0.0 | leaf |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FQ380318 | 0.0 | FQ380318.1 Vitis vinifera clone SS0ACG71YI23. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002279283.1 | 0.0 | PREDICTED: putative GATA transcription factor 22 | ||||
TrEMBL | D7STR6 | 0.0 | D7STR6_VITVI; Uncharacterized protein | ||||
STRING | VIT_04s0008g01290.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26150.1 | 5e-27 | cytokinin-responsive gata factor 1 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01035406001 |
Entrez Gene | 100247474 |