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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01035238001 | ||||||||
Common Name | LOC100254711, VIT_04s0079g00480 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 715aa MW: 78786.1 Da PI: 6.2897 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.5 | 2.7e-19 | 24 | 78 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + ++t++q+++Le++F+ +++p++++r++L ++lgL+ rq+k+WFqN+R++ k GSVIVT01035238001 24 KVYNRHTPQQIQRLEAFFKDCPHPDEAQRRQLGRELGLESRQIKFWFQNKRTQTK 78 667789**********************************************988 PP | |||||||
2 | START | 144.6 | 9.1e-46 | 229 | 450 | 3 | 206 |
HHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGG...CT-TT-SEEEEE CS START 3 aeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddke...qWdetlakaetl 82 a a++el++++ +ep+Wvks+ + d + ++f+++ ++e +++s+vv m+ ++lv+ +ld ++ + + ++ka+t+ GSVIVT01035238001 229 AAGAMDELIRLVRINEPLWVKSAtnekYVLHHDSYERIFPKATHfkssnARIESSKESVVVAMNGMQLVNMFLDPNKyvdLFPTIVTKASTI 320 6679*******************333222333555555554443999999**************************88888888888***** PP EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEE CS START 83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwv 167 +v++ g g lqlm+ ++ lsplv+ R+f+f+Ry++q + g+wv vdvS d ++ ++++ R +lpSg++i+++++g skvtwv GSVIVT01035238001 321 QVLEAGiigsrsGSLQLMYEQMHILSPLVApREFYFLRYCQQIELGVWVMVDVSYDYSKDG--QPNSLRFWKLPSGCMIQDLPDGCSKVTWV 410 *****************************99**************************9998..58*************************** PP E-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 168 ehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206 ehv++++++ h l+r lv+ +la+ga ++v tlqr ce+ GSVIVT01035238001 411 EHVEVDDKSLtHRLYRDLVSGSLAFGAERMVGTLQRMCER 450 ******99988***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.3E-21 | 8 | 74 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.21E-18 | 9 | 80 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.054 | 20 | 80 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.96E-17 | 20 | 81 | No hit | No description |
SMART | SM00389 | 1.0E-17 | 22 | 84 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 7.4E-17 | 24 | 78 | IPR001356 | Homeobox domain |
PROSITE profile | PS50848 | 41.731 | 218 | 453 | IPR002913 | START domain |
SuperFamily | SSF55961 | 4.67E-32 | 219 | 452 | No hit | No description |
CDD | cd08875 | 6.36E-105 | 222 | 449 | No hit | No description |
SMART | SM00234 | 2.5E-33 | 227 | 450 | IPR002913 | START domain |
Pfam | PF01852 | 5.3E-39 | 230 | 450 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 2.2E-9 | 321 | 415 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 3.16E-14 | 469 | 699 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009010 | anatomy | seed | ||||
PO:0025501 | developmental stage | fruit formation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 715 aa Download sequence Send to blast |
MEFRTGGNGS GGDQDGPNPR RGRKVYNRHT PQQIQRLEAF FKDCPHPDEA QRRQLGRELG 60 LESRQIKFWF QNKRTQTKTQ HERADNTALR AENERIQCEN LAIREALKNV ICPSCGGPPF 120 GEEERQRNIE KLQLENAQLK EEHEKVSNLL AKYIGKPITQ MHLLPPALGS SLDFSPGSFP 180 SQETGGLSIP TVGPALGLEL APVDVCNASV MYQFKGFPDM EKTLMTETAA GAMDELIRLV 240 RINEPLWVKS ATNEKYVLHH DSYERIFPKA THFKSSNARI ESSKESVVVA MNGMQLVNMF 300 LDPNKYVDLF PTIVTKASTI QVLEAGIIGS RSGSLQLMYE QMHILSPLVA PREFYFLRYC 360 QQIELGVWVM VDVSYDYSKD GQPNSLRFWK LPSGCMIQDL PDGCSKVTWV EHVEVDDKSL 420 THRLYRDLVS GSLAFGAERM VGTLQRMCER LAYLADENTP TRDLAGVISL PEGRRSIMKL 480 GHRMVKDFCG VLSMSGKLDF PQLSEVDTSG VRVSVRKSTE PGQPGGLIVS AATSLWLPMQ 540 CQTIFDFIRD EKMRPQWDVL SSGNPVHEIA HIANGVNPGN CTSIIRPFVP TENNMLMLQE 600 SCVEPLGGLV VYAPIDIPAI NVAIRGEESG NIPILPSGFI VSGDGRSDSG AGCTSDGNIM 660 GSGGSLLTVA FQVLVCGPAA PQQQLNMESV ATVNTLISST VQKIKIALNC SGLD* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM445277 | 0.0 | AM445277.2 Vitis vinifera contig VV78X256089.20, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002268272.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ROC8 | ||||
Swissprot | Q69T58 | 0.0 | ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8 | ||||
TrEMBL | D7TA28 | 0.0 | D7TA28_VITVI; Uncharacterized protein | ||||
STRING | VIT_04s0079g00480.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP145 | 15 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73360.1 | 0.0 | homeodomain GLABROUS 11 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01035238001 |
Entrez Gene | 100254711 |