PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01034705001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family Trihelix
Protein Properties Length: 552aa    MW: 63387.6 Da    PI: 7.3506
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01034705001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix95.26.4e-30102187187
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                        rW++qe+l+L+e+r++++ +++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r  ++ +++++f+qlea
  GSVIVT01034705001 102 RWPRQETLTLLEIRSRLDPKFKEANQKGPLWAEVSRIMaEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 187
                        8*************************************999*****************************98..55667*******85 PP
2trihelix75.58.5e-24348433186
           trihelix   1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                        rW++qe   Li +r++me+r+++ g +++ lWee++ +m   g+ers+ +Ck+kwen+n +  k++e++kkr +e+ +tc yf+ l+
  GSVIVT01034705001 348 RWPEQELSSLIHLRTSMESRFQDsGYSEESLWEEIATRMGCLGYERSAMRCKQKWENINIYLNKTTEHSKKR-KENLRTCTYFQPLD 433
                        8*********************84679********************************************8.77788*****9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.2799162IPR001005SANT/Myb domain
PROSITE profilePS500906.771101160IPR017877Myb-like domain
CDDcd122031.67E-19101167No hitNo description
PfamPF138373.0E-20101188No hitNo description
PROSITE profilePS500907.294341406IPR017877Myb-like domain
SMARTSM007171.4345408IPR001005SANT/Myb domain
CDDcd122033.92E-24347413No hitNo description
PfamPF138373.6E-15348433No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MEMGDQYGLP DLRQFMARPS HFPAVPHPTE PYLHHYEAIM VGSHMGEVVV PRGLVDFHGD  60
SATATATPTA TATAAATAAS VVGVGGLEME CGGVGGDGGN SRWPRQETLT LLEIRSRLDP  120
KFKEANQKGP LWAEVSRIMA EEHGYQRSGK KCREKFENLY KYYKKTKEGK AGRQDGKHYR  180
FFRQLEALYG ETSNQASTTT IAYMMNHSME KKRGVDDGQS YRRVRKSLKG KIKEFVGLHM  240
KKIMDTQEAW MEKMLTTIEH KEQERLSREE EWRKQEAARF DREYKFWASE RAWIEARDAA  300
LMEALKKFTG KELKLSSPDG LMDKEIQDQN ESMEDIVNEV PDDTTYSRWP EQELSSLIHL  360
RTSMESRFQD SGYSEESLWE EIATRMGCLG YERSAMRCKQ KWENINIYLN KTTEHSKKRK  420
ENLRTCTYFQ PLDPYHGQEI MAKQGSENVG LQKNSEDHLS PSNSSVGTTV HGSCLNILLD  480
EEHLWEDYGV KPSMGKNQQV WHNYLFHHVK SGKGESCQER VYLTLIRPLS LLWPRIIGRA  540
TMVTNWSCHN L*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4699420.0AM469942.2 Vitis vinifera contig VV78X117723.2, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002267674.30.0PREDICTED: trihelix transcription factor PTL
TrEMBLF6I5V30.0F6I5V3_VITVI; Uncharacterized protein
STRINGVIT_13s0074g00400.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8402716
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.11e-116Trihelix family protein