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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GSVIVT01034687001 |
Common Name | LOC100260933, VIT_13s0074g00240 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family |
Trihelix |
Protein Properties |
Length: 472aa MW: 51172.6 Da PI: 8.0818 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GSVIVT01034687001 | genome | Genoscope | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 53.3 | 7e-17 | 92 | 180 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
+W+++ + +L+ea++e+ ++l+rg+l++ +Weev++ + +++ +s +qCk+k++nl+kryk + ++++++ +s++ +f+++e
GSVIVT01034687001 92 EWSDSAISCLLEAYTEKFTQLNRGNLRGRDWEEVAEIVsercDKQKSCKSVEQCKNKIDNLKKRYKVELQRMNSG-GLPVSHWHWFKKIE 180
5********************************9988866667888899*****************999999998.566679******98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 472 aa
Download sequence Send
to blast |
MHNDAASTEK VSGAGDSDAD ADSGGAAFYS QAHDVNPFAV VAAAEESDPA KSGASTPNGK 60 RNPYYYKKLK PSGASESGSG EYRVDYRKDR EEWSDSAISC LLEAYTEKFT QLNRGNLRGR 120 DWEEVAEIVS ERCDKQKSCK SVEQCKNKID NLKKRYKVEL QRMNSGGLPV SHWHWFKKIE 180 AIVGNSPSFK TGSDEDRSGG ASSYMLRQSK RYAPSTVTFA NNMKPKTLSN PKWRRVVFKI 240 SGAALAGNCQ NIDPKVAMQI AREVTTACRL GVEVAIVVGG RNFFCGDSWV SATGLDRPTA 300 YQIGMMATVM NSILLQSALE KLGVQTRVQS AFPTPEVAEP YSRQRAIRHL EKGRVVIFGG 360 IGAGTGNPLF TTDTAAALRA SEINADAVLK GTNVNGIYDC HSANDNVVLD HLSFREVASR 420 GISSMDMMAI TYCEENGIPV VIFNLLEPGN ISRALCGDQV GTLMDQAGRI S*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
3ek5_A | 2e-65 | 228 | 464 | 4 | 239 | Uridylate kinase |
3ek5_B | 2e-65 | 228 | 464 | 4 | 239 | Uridylate kinase |
3ek5_C | 2e-65 | 228 | 464 | 4 | 239 | Uridylate kinase |
3ek5_D | 2e-65 | 228 | 464 | 4 | 239 | Uridylate kinase |
3ek5_E | 2e-65 | 228 | 464 | 4 | 239 | Uridylate kinase |
3ek5_F | 2e-65 | 228 | 464 | 4 | 239 | Uridylate kinase |
3ek6_A | 2e-65 | 228 | 464 | 4 | 239 | Uridylate kinase |
3ek6_B | 2e-65 | 228 | 464 | 4 | 239 | Uridylate kinase |
3ek6_C | 2e-65 | 228 | 464 | 4 | 239 | Uridylate kinase |
3ek6_D | 2e-65 | 228 | 464 | 4 | 239 | Uridylate kinase |
3ek6_E | 2e-65 | 228 | 464 | 4 | 239 | Uridylate kinase |
3ek6_F | 2e-65 | 228 | 464 | 4 | 239 | Uridylate kinase |
Search in ModeBase |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AM474701 | 0.0 | AM474701.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X058624.8, clone ENTAV 115. |