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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GSVIVT01034523001 |
Common Name | VIT_18s0072g00670 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family |
Trihelix |
Protein Properties |
Length: 541aa MW: 62109.9 Da PI: 7.8908 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GSVIVT01034523001 | genome | Genoscope | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 66 | 7.8e-21 | 1 | 69 | 17 | 87 |
trihelix 17 meerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
m+ ++r+++lk+plWeevs+k++e g++rs+k+Ckek+en+ k+++++keg+ ++ + +t+++fdqlea
GSVIVT01034523001 1 MDVTFRDSSLKGPLWEEVSRKLAELGYHRSAKKCKEKFENVFKYHRRTKEGRASK--ADGKTYRFFDQLEA 69
67799************************************************96..66678*******85 PP
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2 | trihelix | 105.7 | 3.3e-33 | 284 | 369 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
rW+k ev+aLi++r++++ +++++ k+plWee+s+ mr+ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+qlea
GSVIVT01034523001 284 RWPKAEVQALIRLRTSLDVKYQENGPKGPLWEEISAGMRKLGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLEA 369
8*********************************************************************8.99***********85 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0010192 | Biological Process | mucilage biosynthetic process |
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 541 aa
Download sequence Send
to blast |
MDVTFRDSSL KGPLWEEVSR KLAELGYHRS AKKCKEKFEN VFKYHRRTKE GRASKADGKT 60 YRFFDQLEAL ETQPSLASLP HSKPPAPAVL AATMPLANLP TTLPEITVPS TLPNPTNSTA 120 NPTIPTIPSP TPPTSRHPPH NNVPTAHPAM AANFLSNSTS SSTSSDEELE RRGKRKRKWK 180 AFFQRLMKDV IERQEELQKR FLEAIEKREH DRMVREEAWK MQEMARMNRE HELLVQERSI 240 AAAKDAAVIA FLQKISEQQN PVLEPRKMDN GGGAENLVPT SSSRWPKAEV QALIRLRTSL 300 DVKYQENGPK GPLWEEISAG MRKLGYNRNA KRCKEKWENI NKYFKKVKES NKKRPEDSKT 360 CPYFHQLEAL YKEKNKMEIN SFNPSYPLLK PENPMVPIMV QPEQQWPLHP EMNRSESGME 420 DMESENNMEQ NQEDDEDDGE EEQEGDEDDE DDGGGYEIRV WHLTGRAVAN GNGSGSDRRS 480 CRREDEWVRF RLARWGCSKN FKKKNLYFRE EDGKKNKHMG CSLYNGLMGE GAEMGEMKEP 540 *
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AM433476 | 0.0 | AM433476.2 Vitis vinifera contig VV78X257449.9, whole genome shotgun sequence. |