PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

G2-like

Protein Properties

Length: 232aa MW: 25897.5 Da PI: 8.8284

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01034259001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99.2	2.9e-31	13	67	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtpeLHe F++av++LGG++kAtPk il+lm+v+gL + hvkSHLQkYRl GSVIVT01034259001 13 KQRIRWTPELHELFLDAVSKLGGPDKATPKGILRLMNVEGLNICHVKSHLQKYRL 67 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.867	10	70	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.2E-29	11	68	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.15E-18	11	68	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.5E-25	13	68	IPR006447	Myb domain, plants
Pfam	PF00249	3.8E-8	17	66	IPR001005	SANT/Myb domain
Pfam	PF14379	5.3E-18	102	148	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MDNQVPEAAA AQKQRIRWTP ELHELFLDAV SKLGGPDKAT PKGILRLMNV EGLNICHVKS 60 HLQKYRLAKA VQMKQDKKAS SSEERKVATK TDERETPIER AMHVTEALRV QVEVQKTLHE 120 QLKLQKVIQL NLEQNGEYLR RILEDQHKAG VALPSLMGSH SNPQPITLSS SDGASSPKQY 180 DFEVDCFPSL LSKHKASHTT ESEQPRCHKK PRRSSSVEII SIDSPAESVE G*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-23	13	69	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-23	13	69	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	9e-24	13	69	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	9e-24	13	69	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	9e-24	13	69	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	9e-24	13	69	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-23	13	69	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-23	13	69	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-23	13	69	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-23	13	69	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-23	13	69	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-23	13	69	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM453046	0.0	AM453046.2 Vitis vinifera contig VV78X159248.8, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019077684.1	2e-90	PREDICTED: myb family transcription factor PHL6-like
TrEMBL	D7U892	1e-170	D7U892_VITVI; Uncharacterized protein
STRING	VIT_09s0070g00410.t01	1e-170	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP78	17	262

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	3e-51	G2-like family protein

Link Out ? help Back to Top
Phytozome	GSVIVT01034259001