PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01034156001
Common NameLOC100247654, VIT_08s0007g00500
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB_related
Protein Properties Length: 688aa    MW: 76085.2 Da    PI: 9.9513
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01034156001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.74.8e-07598647147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                        r +++  E e lv+av+ lG+g+W+ +  +     k+Rt  ++k++w ++
  GSVIVT01034156001 598 RRPFSVSEVEALVQAVENLGTGRWRDVKLCAFdgaKHRTYVDLKDKWKTL 647
                        678999**********************999999*************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542367.22E-6403484IPR029071Ubiquitin-related domain
PROSITE profilePS5129412.668593652IPR017930Myb domain
SMARTSM007172.0E-6597650IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-9598648IPR009057Homeodomain-like
SuperFamilySSF466891.99E-14599680IPR009057Homeodomain-like
CDDcd116601.69E-14599649No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031627Biological Processtelomeric loop formation
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 688 aa     Download sequence    Send to blast
MVLQKRLDYG FSGYQVPWVP RASRSPRGRG SSKKKLEDDR IYAFEVLASL AGKLLQERET  60
SASISDASRK NQHTVVKCET HDKGHQIKLE PRDENTLAYV PHANDDLSLK ISSTINSDLP  120
ENVCFSDKLD VDCRQKARGS SPSKVAGDFP CCGIFFEGNV DSVIEKNLEV EPQEIRGMVS  180
KTHPKKGSSK DLGELDRATL APVHLDNNAK ASLFSDHMNC GPSPRCQENM EVVSGDDDEN  240
SSGCSQPGTI MKTYTPRRHI GNQRIRKLSA SRCWGGTPNL KDGGFLNTDR KRKPVYWTWK  300
TCYPRRRSQR ISPFKRRKLL DQNPESTSDR GLRRKLLDQN PESTSDRGLR RKLHNQNLES  360
AFDRGFSCAG MYNSHNKGKK SENSSAAGGA SSSVAGQQAP SHSRDCNVKL SIKSFRVPEL  420
FVEIPATATV GSLKRTVMEA VTAVLGGGLH VGILLQGKKV GDDSKTLLQS GISQGDKLRT  480
LGFMLEPRCT QIPPSLCAED PAVFLHGCTP QHLTSFSTTP TSGPGTSKIS PDPPVTNLSK  540
CVQRNHDTAP SHTDISTDKT IPESRALLAV PSVSLKPLAM VPFHQKSRRP EFVQRRIRRP  600
FSVSEVEALV QAVENLGTGR WRDVKLCAFD GAKHRTYVDL KDKWKTLVHT AKISPQQRRG  660
EPVPQELLDR VLAAHAYWSQ QQVKVEV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A5e-545826871106Telomere binding protein TBP1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.269980.0inflorescence
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3812610.0FQ381261.1 Vitis vinifera clone SS0ACG16YO04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010654272.10.0PREDICTED: telomere repeat-binding protein 5 isoform X3
TrEMBLD7THM60.0D7THM6_VITVI; Uncharacterized protein
STRINGVIT_08s0007g00500.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13911225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.16e-95TRF-like 2