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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GSVIVT01034148001 |
Common Name | LOC100254510, VIT_08s0007g00570 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family |
WRKY |
Protein Properties |
Length: 300aa MW: 33157.9 Da PI: 4.9671 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GSVIVT01034148001 | genome | Genoscope | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 102.1 | 3.1e-32 | 112 | 168 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58
dDgy+WrKYGqK++k+s++prsYYrCt ++C++kk+ve+s+edp++++itYeg H h
GSVIVT01034148001 112 DDGYKWRKYGQKSIKNSPNPRSYYRCTNPRCSAKKQVEKSSEDPDTLIITYEGLHLH 168
8******************************************************99 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 300 aa
Download sequence Send
to blast |
MDELMAAWTE GSEDELVREL LDDESPFLVV PQETVESKLM SSSSEQAISR LVSTAYTGPT 60 IEDIESALSL TTGKCQSEEN SQARTSIHER DLSKIENKYT LKIKSCGNGM ADDGYKWRKY 120 GQKSIKNSPN PRSYYRCTNP RCSAKKQVEK SSEDPDTLII TYEGLHLHFA YPFFLISPPQ 180 NVPSPSKKPK RIGLQEGQDQ VHDAPQIQET QGSPPTADHG SFPTMFTHVQ EEDAAEKMGP 240 QGLLEDMVPL MIRNPANNIT SSTSSSSSYP SPPNSPSSPS CSLGYSPSYF DISKRYSIR*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AM458788 | 0.0 | AM458788.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X278469.4, clone ENTAV 115. |
Orthologous Group
? help Back to Top |
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP14 | 17 | 875 |