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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01033886001 | ||||||||
Common Name | LOC100249478, VIT_08s0007g02940 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | NAC | ||||||||
Protein Properties | Length: 218aa MW: 24445.9 Da PI: 8.098 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 102.9 | 4.3e-32 | 4 | 103 | 33 | 127 |
NAM 33 vikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgekt 119 vi+ vdiy+++PwdLp+ + ++++ew+fF++r++++a+g r+nr t+sgyWkatg+ +v+s+ +++ +g k+t+v+y+grap+g+kt GSVIVT01033886001 4 VIPVVDIYDHNPWDLPQisgDLCHGDHEWFFFIPRQEREARGGRPNRLTTSGYWKATGSPGHVYSSgqNSRIIGGKRTMVYYEGRAPHGRKT 95 7999************64554445899**************************************8666777******************** PP NAM 120 dWvmheyr 127 +W m+ey+ GSVIVT01033886001 96 EWKMNEYK 103 *******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 39.42 | 1 | 131 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.35E-37 | 3 | 131 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-11 | 29 | 103 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MGRVIPVVDI YDHNPWDLPQ ISGDLCHGDH EWFFFIPRQE REARGGRPNR LTTSGYWKAT 60 GSPGHVYSSG QNSRIIGGKR TMVYYEGRAP HGRKTEWKMN EYKAIDGEAA TSNTANPPLR 120 QEFSLCRVYM KTKCLRAFDR RPSGALGREA ASGRARGDEA AATSRHQNPQ MVERTSSPES 180 SSSSGDHANP SQTGESSNWE MSADNPPLWE WEQLNWF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 2e-25 | 3 | 131 | 50 | 168 | NAC domain-containing protein 19 |
3swm_B | 2e-25 | 3 | 131 | 50 | 168 | NAC domain-containing protein 19 |
3swm_C | 2e-25 | 3 | 131 | 50 | 168 | NAC domain-containing protein 19 |
3swm_D | 2e-25 | 3 | 131 | 50 | 168 | NAC domain-containing protein 19 |
3swp_A | 2e-25 | 3 | 131 | 50 | 168 | NAC domain-containing protein 19 |
3swp_B | 2e-25 | 3 | 131 | 50 | 168 | NAC domain-containing protein 19 |
3swp_C | 2e-25 | 3 | 131 | 50 | 168 | NAC domain-containing protein 19 |
3swp_D | 2e-25 | 3 | 131 | 50 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM469974 | 1e-165 | AM469974.2 Vitis vinifera contig VV78X271653.5, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002276192.1 | 1e-162 | PREDICTED: NAC domain-containing protein 90 | ||||
Swissprot | Q9FMR3 | 6e-66 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A438EK40 | 1e-161 | A0A438EK40_VITVI; NAC domain-containing protein 90 | ||||
TrEMBL | F6HKN2 | 1e-161 | F6HKN2_VITVI; Uncharacterized protein | ||||
STRING | VIT_08s0007g02940.t01 | 1e-162 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP2278 | 11 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 1e-65 | NAC domain containing protein 90 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01033886001 |
Entrez Gene | 100249478 |
Publications ? help Back to Top | |||
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