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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GSVIVT01033792001 |
Common Name | VIT_08s0007g03820 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family |
Trihelix |
Protein Properties |
Length: 562aa MW: 64145.5 Da PI: 7.0634 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GSVIVT01033792001 | genome | Genoscope | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 94.7 | 8.8e-30 | 115 | 200 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
rW++qe+l+L+e+r++++++++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r ++ +++++f+qlea
GSVIVT01033792001 115 RWPRQETLTLLEIRSRLDSKFKEANQKGPLWDEVSRIMsEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 200
8*************************************999*****************************98..55667*******85 PP
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2 | trihelix | 72.6 | 6.9e-23 | 410 | 490 | 2 | 82 |
trihelix 2 WtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82
W+++e+ L+++r++me+r+++ g++++ lWe+++ km+ g+ rs+++Ck+kw+++n++ ++ke +kkr +e+s++c yf
GSVIVT01033792001 410 WPESEITRLMQLRTNMESRFQQaGSSEEVLWEDIAGKMACLGYDRSAIMCKDKWNSINNYLLRTKECNKKR-KENSRSCTYF 490
*********************7589*********************************************8.788889***9 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009909 | Biological Process | regulation of flower development |
GO:0010200 | Biological Process | response to chitin |
GO:0046621 | Biological Process | negative regulation of organ growth |
GO:0048442 | Biological Process | sepal development |
GO:0048498 | Biological Process | establishment of petal orientation |
GO:0090428 | Biological Process | perianth development |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 562 aa
Download sequence Send
to blast |
MAMEDHHHYG MADLRQFMNT RPHFPPIPHH PDLFPAHHHH RTLTPAQPYD LMMVGRQVTH 60 DMMSRGLHDF VTDSAAPPPT TTATNTNTVV PTSNATLTGL DADAACLGGD ASTGRWPRQE 120 TLTLLEIRSR LDSKFKEANQ KGPLWDEVSR IMSEEHGYQR SGKKCREKFE NLYKYYKKTK 180 EGKAGRQDGK HYRFFRQLEA LYGDTSNAVS VPENHLAGSS LTFHTATNLN IATQNQEIFQ 240 TPKLCDSLSL SNSSDFDTSS SEDDDHNNTG PTENGSTDKK NRRSRRSWKV KIKDFIDSQM 300 RKLMEKQEAW LEKMLKALEH KEQERILREE EWRKQEAARL DREHKFWATQ RAWIEARDAA 360 LMDTLQKLTG RELKVPSPEE LMATQHRNPG ERQNENGSET VSNSVKGDSW PESEITRLMQ 420 LRTNMESRFQ QAGSSEEVLW EDIAGKMACL GYDRSAIMCK DKWNSINNYL LRTKECNKKR 480 KENSRSCTYF LSNETLYNQG GAYCEISEPG PEMARLQPNE GSPPSNSNAG SAVPDSCFRF 540 LMADGNLWEN YALKLNKGDN Q*
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: First observed in the early-developing flower, in four zones between the initiating sepals and in their developing margins. Later detected in the margins of expanding sepals, petals and stamens, and in the leaf margins. {ECO:0000269|PubMed:15269176}. |
Uniprot | TISSUE SPECIFICITY: Confined to flowers, at low levels. Also present in 7-days-old seedlings. Barely detectable in other tissues such as young seedlings, roots, stems, leaves and siliques (PubMed:15269176). Expressed in flower primordia, more precisely between newly arisen sepal primordia and also at the basal margins of developing sepals (PubMed:25697797). {ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:25697797}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:18080804}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269|PubMed:15269176}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AM442910 | 0.0 | AM442910.2 Vitis vinifera contig VV78X232607.28, whole genome shotgun sequence. |