PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01033748001
Common NameLOC100264768, VIT_08s0007g04160
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family Trihelix
Protein Properties Length: 369aa    MW: 40302.2 Da    PI: 9.8271
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01033748001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix42.61.5e-134731886
           trihelix 18 eerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
                        ++l+rg+l++ +Weev++ +  r  + ++s +qCk+k +nl+kryk ++++++++   s s++p+f+++e
  GSVIVT01033748001  4 FTQLNRGNLRGRDWEEVAAIVseRCDKQSKSVEQCKNKVDNLKKRYKLERHRMSNG-GVSASHWPWFKKME 73
                       57899****************666668899************************99.566679*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.6E-15575No hitNo description
Gene3DG3DSA:3.40.1160.106.1E-77120361IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B34.173127362IPR015963Uridylate kinase, bacteria
SuperFamilySSF536337.99E-61128361IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042546.23E-125130362No hitNo description
PfamPF006962.6E-27131341IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0046939Biological Processnucleotide phosphorylation
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MEKFTQLNRG NLRGRDWEEV AAIVSERCDK QSKSVEQCKN KVDNLKKRYK LERHRMSNGG  60
VSASHWPWFK KMEEIVGNSL PVKAVSDEDK SIVASGNMLR QSKRFAMATP SPVGQINNVK  120
SKSISNPRWR RVVFKISGAA LAGTGPHNID PKVAMLIARE VAVACRLGVE VAIVVGGRNF  180
FCGDTWVTAT GLDRPTAYQI GMMATVMNSI LLQSALEKMG VQTRVQTAFA MQEVAEPYSR  240
QRAIRHLEKG RVVIFGGIGA GTGNPLFSTD TAAALRASEI NADAVLKGTN VDGVYDCNSR  300
NNNVTFEHIS FRELVSSGAT SMDMMAMTFC EENRIPVVVF NLLEPGNISR ALCGDQVGTL  360
IDQTGRIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A2e-681213611239Uridylate kinase
3ek5_B2e-681213611239Uridylate kinase
3ek5_C2e-681213611239Uridylate kinase
3ek5_D2e-681213611239Uridylate kinase
3ek5_E2e-681213611239Uridylate kinase
3ek5_F2e-681213611239Uridylate kinase
3ek6_A2e-681213611239Uridylate kinase
3ek6_B2e-681213611239Uridylate kinase
3ek6_C2e-681213611239Uridylate kinase
3ek6_D2e-681213611239Uridylate kinase
3ek6_E2e-681213611239Uridylate kinase
3ek6_F2e-681213611239Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4751281e-173AM475128.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X048092.27, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002277826.10.0PREDICTED: uncharacterized protein LOC100264768 isoform X2
SwissprotQ7VD611e-82PYRH_PROMA; Uridylate kinase
TrEMBLF6HKF70.0F6HKF7_VITVI; Uncharacterized protein
STRINGVIT_08s0007g04160.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP61611218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.10.0Trihelix family protein