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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GSVIVT01033748001 |
Common Name | LOC100264768, VIT_08s0007g04160 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family |
Trihelix |
Protein Properties |
Length: 369aa MW: 40302.2 Da PI: 9.8271 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GSVIVT01033748001 | genome | Genoscope | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 42.6 | 1.5e-13 | 4 | 73 | 18 | 86 |
trihelix 18 eerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
++l+rg+l++ +Weev++ + r + ++s +qCk+k +nl+kryk ++++++++ s s++p+f+++e
GSVIVT01033748001 4 FTQLNRGNLRGRDWEEVAAIVseRCDKQSKSVEQCKNKVDNLKKRYKLERHRMSNG-GVSASHWPWFKKME 73
57899****************666668899************************99.566679*******8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 369 aa
Download sequence Send
to blast |
MEKFTQLNRG NLRGRDWEEV AAIVSERCDK QSKSVEQCKN KVDNLKKRYK LERHRMSNGG 60 VSASHWPWFK KMEEIVGNSL PVKAVSDEDK SIVASGNMLR QSKRFAMATP SPVGQINNVK 120 SKSISNPRWR RVVFKISGAA LAGTGPHNID PKVAMLIARE VAVACRLGVE VAIVVGGRNF 180 FCGDTWVTAT GLDRPTAYQI GMMATVMNSI LLQSALEKMG VQTRVQTAFA MQEVAEPYSR 240 QRAIRHLEKG RVVIFGGIGA GTGNPLFSTD TAAALRASEI NADAVLKGTN VDGVYDCNSR 300 NNNVTFEHIS FRELVSSGAT SMDMMAMTFC EENRIPVVVF NLLEPGNISR ALCGDQVGTL 360 IDQTGRIS*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
3ek5_A | 2e-68 | 121 | 361 | 1 | 239 | Uridylate kinase |
3ek5_B | 2e-68 | 121 | 361 | 1 | 239 | Uridylate kinase |
3ek5_C | 2e-68 | 121 | 361 | 1 | 239 | Uridylate kinase |
3ek5_D | 2e-68 | 121 | 361 | 1 | 239 | Uridylate kinase |
3ek5_E | 2e-68 | 121 | 361 | 1 | 239 | Uridylate kinase |
3ek5_F | 2e-68 | 121 | 361 | 1 | 239 | Uridylate kinase |
3ek6_A | 2e-68 | 121 | 361 | 1 | 239 | Uridylate kinase |
3ek6_B | 2e-68 | 121 | 361 | 1 | 239 | Uridylate kinase |
3ek6_C | 2e-68 | 121 | 361 | 1 | 239 | Uridylate kinase |
3ek6_D | 2e-68 | 121 | 361 | 1 | 239 | Uridylate kinase |
3ek6_E | 2e-68 | 121 | 361 | 1 | 239 | Uridylate kinase |
3ek6_F | 2e-68 | 121 | 361 | 1 | 239 | Uridylate kinase |
Search in ModeBase |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AM475128 | 1e-173 | AM475128.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X048092.27, clone ENTAV 115. |