PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01033746001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family Trihelix
Protein Properties Length: 411aa    MW: 47082.1 Da    PI: 9.9763
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01033746001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix78.69e-2597196186
           trihelix   1 rWtkqevlaLiearremeerlrrgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessst 78 
                        +Wt+++v++Li a+ +++++ ++++             +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +k+ +++++++
  GSVIVT01033746001  97 KWTDNMVRLLIMAVFYIGDEGGSECsdpsakkktggllQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtACRVVEN 188
                        7*********************9888888999999**9**********************************************55****** PP

           trihelix  79 cpyfdqle 86 
                         +++d ++
  GSVIVT01033746001 189 QSLLDTMD 196
                        *****998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.7E-2295222No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MLGLEMPLQQ PQQQQNPQNP HHTHHHTHLQ QHPQMVAFAH PDPDHHSQSQ QPVKHGYPYV  60
TKAKQQLTLS DEDEPGLTGD DSTADGKRKV SPWHRMKWTD NMVRLLIMAV FYIGDEGGSE  120
CSDPSAKKKT GGLLQKKGKW KSVSRAMMEK GFYVSPQQCE DKFNDLNKRY KRVNDILGKG  180
TACRVVENQS LLDTMDQLSP KMKDEVRKLL NSKHLFFREM CAYHNSCGGG GTSGAHPSPP  240
DTATEASKMR RLKRARKGLF PSPSPSPLMR QLSSEVMSVL QDGTKSTLEK KQWMRSRMMQ  300
LEEQRVSYQC KAFELEKQRL KWVKFSSKKE REMEREKLVN QRKRLENERM ALLLRQKEHG  360
GWFCSFLLLQ NFVYDFGTRV CIHPILSTLL LVHSPLLGCF GEALNITINS *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4751280.0AM475128.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X048092.27, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019076932.11e-158PREDICTED: stress response protein NST1
RefseqXP_019076933.11e-158PREDICTED: stress response protein NST1
RefseqXP_019076934.11e-158PREDICTED: stress response protein NST1
TrEMBLA0A2P5WQP11e-166A0A2P5WQP1_GOSBA; Uncharacterized protein
STRINGcassava4.1_007978m1e-160(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9974610
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.11e-101sequence-specific DNA binding transcription factors