PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01033632001
Common NameLOC100252149, VIT_08s0007g05170
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bZIP
Protein Properties Length: 452aa    MW: 49909.8 Da    PI: 8.4507
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01033632001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.42e-10166207546
                        CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 
                        k  rr+++NReAAr+sR+RKka++++Le+   +L++  ++L+
  GSVIVT01033632001 166 KTLRRLAQNREAARKSRLRKKAYVQQLENSRMKLTQLEQELQ 207
                        788*************************99888887776654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.0E-9162225IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.484164208IPR004827Basic-leucine zipper domain
CDDcd147082.53E-20166218No hitNo description
PfamPF001701.8E-7166207IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.25E-7166209No hitNo description
Gene3DG3DSA:1.20.5.1701.1E-7167211No hitNo description
PROSITE patternPS000360169184IPR004827Basic-leucine zipper domain
PfamPF141441.2E-31248323IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MGSRTVKVGA EDVSKVTPGM PSFIPQIPIS NSIGTEGNNI RSRISDFGAL EQSLGFRIED  60
AVDLSRNSVF NSAKPSSQAP STDLQFGALN KTSTVQKELQ QNIASVSGSH RENWGESNMA  120
DASPRTDTST DVDTDEKNQR FEMGQSAALV ASDSSDRSKE KAGDQKTLRR LAQNREAARK  180
SRLRKKAYVQ QLENSRMKLT QLEQELQRAR QQGIFISSSG DQSHSMSGNG ALAFDVEYAR  240
WLEEHNRQIN ELRSAVNSHA SDTELRTIVD NVTAHFDDIF RLKGIAAKAD VFHILSGMWK  300
TPAERCFMWI GGFRSSEVLK LLVNQLEPLT EQQLMSIYNL QQSSQQAEDA LSQGMEALQQ  360
SLAETLTSGS PGPSGSSGNV ANYMGQMAMA MGKLGTLEGF LRQADNLRQQ TLQQMHRILT  420
TRQSARALLA INDYFSRLRA LSSLWLARPR E*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.33110.0flower| fruit| inflorescence| leaf| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4282461e-150AM428246.2 Vitis vinifera contig VV78X187893.3, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003632741.10.0PREDICTED: transcription factor TGA2.2
SwissprotO241600.0TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1
TrEMBLD7TIQ10.0D7TIQ1_VITVI; Uncharacterized protein
STRINGVIT_08s0007g05170.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7221667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-150TGACG motif-binding factor 6