PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01033528001 | ||||||||
Common Name | VIT_08s0007g06180 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | G2-like | ||||||||
Protein Properties | Length: 185aa MW: 20484.3 Da PI: 8.6301 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100 | 1.6e-31 | 112 | 166 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtp+LHe+Fve+v++LGG+ekAtPk+il+lm+ +gLt+ hvk HLQkYR+ GSVIVT01033528001 112 KPRIRWTPDLHEHFVECVNRLGGAEKATPKAILKLMDSEGLTIFHVKRHLQKYRI 166 79****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.02E-16 | 110 | 168 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.0E-28 | 111 | 168 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.5E-22 | 112 | 167 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.2E-8 | 116 | 165 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MRQKGHISTC SYTPHDFPQK VNIWIVSIAG KSEKGASSSD VPHLDNEDGM QIREALQLQL 60 DLQRRLHEQY SEVYGYLCKS SPLAQQAQCA TSSSEGVSIA SADPVSPVLH SKPRIRWTPD 120 LHEHFVECVN RLGGAEKATP KAILKLMDSE GLTIFHVKRH LQKYRIAKHK PGFAGGKPLF 180 DVDS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 4e-24 | 112 | 170 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 4e-24 | 112 | 170 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 4e-24 | 112 | 170 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 4e-24 | 112 | 170 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 4e-24 | 112 | 170 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 4e-24 | 112 | 170 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 4e-24 | 112 | 170 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 4e-24 | 112 | 170 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM424652 | 1e-104 | AM424652.2 Vitis vinifera contig VV78X014098.14, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019077094.1 | 1e-104 | PREDICTED: protein PHOSPHATE STARVATION RESPONSE 2 | ||||
TrEMBL | D7TIG7 | 1e-135 | D7TIG7_VITVI; Uncharacterized protein | ||||
STRING | VIT_08s0007g06180.t01 | 1e-136 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP78 | 17 | 262 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06800.2 | 1e-32 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01033528001 |