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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GSVIVT01033481001 |
Common Name | LOC100265773, VIT_08s0007g06670 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family |
HD-ZIP |
Protein Properties |
Length: 251aa MW: 27739.2 Da PI: 9.3451 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GSVIVT01033481001 | genome | Genoscope | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 55.7 | 8.1e-18 | 93 | 147 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k
GSVIVT01033481001 93 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 147
778899***********************************************98 PP
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2 | HD-ZIP_I/II | 128.8 | 2.3e-41 | 93 | 183 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
+kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk
GSVIVT01033481001 93 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELR-ALK 183
69*************************************************************************************9.555 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 251 aa
Download sequence Send
to blast |
MGLGTGIIGK GQGHGGEEDE RKVSSDPPVQ LDLLPFSPVP RHHPSSQLRF PWLADNLMSE 60 PGSSDGSGRA LDVNRFPVAT SRASDDDENG STRKKLRLSK EQSAFLEESF KEHNTLNPKQ 120 KLALAKQLNL RPRQVEVWFQ NRRARTKLKQ TEVDCEYLKR CCETLTEENR RLQKELQELR 180 ALKTSQPFYM QLPATTLTMC PSCERVATTS TSSSAAAAAP TSTSATLART RLFPFSQAHV 240 HQAPAHQAAS *
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 91 | 97 | TRKKLRL |
2 | 141 | 149 | RRARTKLKQ |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AM484720 | 1e-179 | AM484720.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X012396.11, clone ENTAV 115. |