PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01033300001
Common NameLOC100255506, VIT_08s0007g08360
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C2H2
Protein Properties Length: 243aa    MW: 27036.8 Da    PI: 8.1137
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01033300001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2171.7e-05214236223
                        EETTTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                        +Cp+C++ F+++ +L+ H  + H
  GSVIVT01033300001 214 VCPKCSRGFRDPVSLVEHVERdH 236
                        7*****************99888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183101.44E-12650No hitNo description
PROSITE profilePS510397.5721056IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.102.0E-101153IPR000058Zinc finger, AN1-type
PfamPF014281.5E-121351IPR000058Zinc finger, AN1-type
SMARTSM001543.1E-51352IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.104.4E-1190155IPR000058Zinc finger, AN1-type
SuperFamilySSF1183103.66E-993146No hitNo description
PROSITE profilePS510397.95998145IPR000058Zinc finger, AN1-type
PfamPF014281.6E-7101141IPR000058Zinc finger, AN1-type
SMARTSM001540.13101142IPR000058Zinc finger, AN1-type
PROSITE profilePS501578.85213241IPR007087Zinc finger, C2H2
PROSITE patternPS000280215236IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MGTPEFPDLG KHCTVDDCKQ IDFLPFTCDR CHQIFCLEHR SYIKHHCPTA DRKDVTVVIC  60
PLCAKGVRLI PDEDPNVTWE THVNTECDPS NYEKATKKKK CPVSGCREIL TFSNTLKCRD  120
CTIDHCLKHR FGPDHKCPGP KKPEAAFPFI GLLNRSKKED SKPSRAPTSS SKWATSFLNV  180
ASNVRASAEA GMTKLTSEFS QAWQTTRDGV TIDVCPKCSR GFRDPVSLVE HVERDHGGTS  240
KA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.290880.0inflorescence| leaf
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4608190.0AM460819.2 Vitis vinifera contig VV78X099670.6, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002283838.11e-169PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
SwissprotQ0D5B91e-115SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBLA0A438JKU91e-168A0A438JKU9_VITVI; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBLF6HL001e-168F6HL00_VITVI; Uncharacterized protein
STRINGVIT_08s0007g08360.t011e-169(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP19091520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57480.11e-117C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]