PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01033300001 | ||||||||
Common Name | LOC100255506, VIT_08s0007g08360 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | C2H2 | ||||||||
Protein Properties | Length: 243aa MW: 27036.8 Da PI: 8.1137 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17 | 1.7e-05 | 214 | 236 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp+C++ F+++ +L+ H + H GSVIVT01033300001 214 VCPKCSRGFRDPVSLVEHVERdH 236 7*****************99888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF118310 | 1.44E-12 | 6 | 50 | No hit | No description |
PROSITE profile | PS51039 | 7.572 | 10 | 56 | IPR000058 | Zinc finger, AN1-type |
Gene3D | G3DSA:4.10.1110.10 | 2.0E-10 | 11 | 53 | IPR000058 | Zinc finger, AN1-type |
Pfam | PF01428 | 1.5E-12 | 13 | 51 | IPR000058 | Zinc finger, AN1-type |
SMART | SM00154 | 3.1E-5 | 13 | 52 | IPR000058 | Zinc finger, AN1-type |
Gene3D | G3DSA:4.10.1110.10 | 4.4E-11 | 90 | 155 | IPR000058 | Zinc finger, AN1-type |
SuperFamily | SSF118310 | 3.66E-9 | 93 | 146 | No hit | No description |
PROSITE profile | PS51039 | 7.959 | 98 | 145 | IPR000058 | Zinc finger, AN1-type |
Pfam | PF01428 | 1.6E-7 | 101 | 141 | IPR000058 | Zinc finger, AN1-type |
SMART | SM00154 | 0.13 | 101 | 142 | IPR000058 | Zinc finger, AN1-type |
PROSITE profile | PS50157 | 8.85 | 213 | 241 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 215 | 236 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MGTPEFPDLG KHCTVDDCKQ IDFLPFTCDR CHQIFCLEHR SYIKHHCPTA DRKDVTVVIC 60 PLCAKGVRLI PDEDPNVTWE THVNTECDPS NYEKATKKKK CPVSGCREIL TFSNTLKCRD 120 CTIDHCLKHR FGPDHKCPGP KKPEAAFPFI GLLNRSKKED SKPSRAPTSS SKWATSFLNV 180 ASNVRASAEA GMTKLTSEFS QAWQTTRDGV TIDVCPKCSR GFRDPVSLVE HVERDHGGTS 240 KA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.29088 | 0.0 | inflorescence| leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in environmental stress response. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM460819 | 0.0 | AM460819.2 Vitis vinifera contig VV78X099670.6, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002283838.1 | 1e-169 | PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 | ||||
Swissprot | Q0D5B9 | 1e-115 | SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 | ||||
TrEMBL | A0A438JKU9 | 1e-168 | A0A438JKU9_VITVI; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 | ||||
TrEMBL | F6HL00 | 1e-168 | F6HL00_VITVI; Uncharacterized protein | ||||
STRING | VIT_08s0007g08360.t01 | 1e-169 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP1909 | 15 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57480.1 | 1e-117 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01033300001 |
Entrez Gene | 100255506 |
Publications ? help Back to Top | |||
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