PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01033188001
Common NameLOC100254807, VIT_04s0069g00920
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family WRKY
Protein Properties Length: 268aa    MW: 29280.1 Da    PI: 9.8064
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01033188001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1017e-32189247259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+++dp ++++tYegeH h+
  GSVIVT01033188001 189 ADEYSWRKYGQKPIKGSPYPRGYYKCSSMrGCPARKHVERASDDPAMLIVTYEGEHSHS 247
                        69************************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105335.9E-19139186IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.0E-33176248IPR003657WRKY domain
PROSITE profilePS5081130.308183249IPR003657WRKY domain
SuperFamilySSF1182901.09E-26186248IPR003657WRKY domain
SMARTSM007747.0E-39188248IPR003657WRKY domain
PfamPF031061.4E-27190246IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MAVELLGFSK MDEQIAIQDA ASAGLKSMEH LIRMLSHQTN QNHNMNQLDC REITDYTVSK  60
FKKVISILNR TGHARFRRGP VSSSDSPSSD PMSSATNSSF MSSITGDGSV SNGKQGSSLF  120
LAPAPAVSAG KPPLSSSCRK RCHEHDHSDD ISGKYSSSGR CHCSKRRRSR VKKTIRVPAI  180
SSKIADIPAD EYSWRKYGQK PIKGSPYPRG YYKCSSMRGC PARKHVERAS DDPAMLIVTY  240
EGEHSHSQVA MQEMIPHGGV GLVFEST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-23176246271WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.189701e-170cell culture| flower| inflorescence
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Function -- GeneRIF ? help Back to Top
  1. VvWRKY11 gene encodes for a transcriptional factor that is involved in dehydration stress response. [VvWRKY11]
    [PMID: 20354906]
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM8861670.0AM886167.1 Vitis thunbergii mRNA for DNA-binding protein (wrky11 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010265415.11e-138PREDICTED: probable WRKY transcription factor 17
SwissprotQ9SJA81e-103WRK17_ARATH; Probable WRKY transcription factor 17
TrEMBLA0A1U8AHW61e-137A0A1U8AHW6_NELNU; probable WRKY transcription factor 17
STRINGXP_010265415.11e-138(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP35571127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24570.11e-77WRKY DNA-binding protein 17
Publications ? help Back to Top
  1. Liu H, et al.
    Ectopic expression of a grapevine transcription factor VvWRKY11 contributes to osmotic stress tolerance in Arabidopsis.
    Mol. Biol. Rep., 2011. 38(1): p. 417-27
    [PMID:20354906]
  2. Ali MA,Wieczorek K,Kreil DP,Bohlmann H
    The beet cyst nematode Heterodera schachtii modulates the expression of WRKY transcription factors in syncytia to favour its development in Arabidopsis roots.
    PLoS ONE, 2014. 9(7): p. e102360
    [PMID:25033038]
  3. Ali MA, et al.
    Transcription factors WRKY11 and WRKY17 are involved in abiotic stress responses in Arabidopsis.
    J. Plant Physiol., 2018. 226: p. 12-21
    [PMID:29689430]