PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01033083001 | ||||||||
Common Name | LOC100249687, VIT_14s0068g01930, VITISV_010523 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | C2H2 | ||||||||
Protein Properties | Length: 254aa MW: 28773.5 Da PI: 9.0063 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.9 | 0.00033 | 94 | 116 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C+++++++ +L H + H GSVIVT01033083001 94 SCSVCSRVYPTSRLLSIHVSEaH 116 6*****************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.6 | 66 | 91 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 68 | 91 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 5.4 | 93 | 116 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 95 | 116 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.15 | 131 | 156 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 133 | 156 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MEVVMEESQL GFPYWSSVRR RFGPESPFFT SGNIERELLA KQVALDLTED EKQHLQNLED 60 EEGRGLFCPI VGCGARLTSL EGFEDHYNAR HTASCSVCSR VYPTSRLLSI HVSEAHDSFF 120 QAKVARGYAM YECLVEGCGM KLKSYKSRQQ HLVDKHKFPT SFEFFKKGQP SKKRRQKLQR 180 KQAVHKREEA SSTMEIEEET ISGLVSAVSK LSTSDSTPSS VSFGRHHTRG FTFVPRAVQN 240 EKRPDSTQAI TKR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 171 | 176 | KKRRQK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.19252 | 0.0 | flower |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM454881 | 0.0 | AM454881.2 Vitis vinifera contig VV78X003317.3, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002270554.1 | 0.0 | PREDICTED: zinc finger protein 511 | ||||
TrEMBL | A5BCW3 | 0.0 | A5BCW3_VITVI; Uncharacterized protein | ||||
STRING | VIT_14s0068g01930.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP7538 | 13 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14140.1 | 1e-102 | zinc ion binding;nucleic acid binding;zinc ion binding |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01033083001 |
Entrez Gene | 100249687 |